Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m12f
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    29   2.9  
01_05_0358 + 21345948-21346206,21346467-21346489                       29   2.9  
12_01_1053 - 10840558-10841085,10841363-10841528,10841571-108417...    28   5.1  
12_01_0342 + 2634678-2635937                                           27   8.9  
12_01_0334 - 2573375-2574634                                           27   8.9  
05_03_0520 + 14956476-14958179                                         27   8.9  
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    27   8.9  
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    27   8.9  
01_07_0373 + 43136075-43136134,43136223-43136338,43136437-431365...    27   8.9  

>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 192 HACQTSHVTIQLGIGTHVGGRSTLLNY 112
           HAC  SHV ++L    H   R+TL ++
Sbjct: 342 HACANSHVLMELNSSKHTATRTTLPSF 368


>01_05_0358 + 21345948-21346206,21346467-21346489
          Length = 93

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 393 KREQRKKEFVAMWEKEYGKPDE 458
           +R +RKK+F AM   + GKPDE
Sbjct: 8   RRRRRKKDFGAMKLSDLGKPDE 29


>12_01_1053 -
           10840558-10841085,10841363-10841528,10841571-10841787,
           10842321-10842420
          Length = 336

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 255 ETIPLHPLS---ETHLL*SYWSPWHACQTSHVTIQLGIGTHVGGRSTLLN 115
           + +PL P+      HLL +  +    CQ+  +T+ L IG+  GG S  +N
Sbjct: 222 QRLPLRPILVDISGHLLTAVGADIKHCQSRGITVLLSIGSQGGGYSLHIN 271


>12_01_0342 + 2634678-2635937
          Length = 419

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 389 EIFRILGFLKRMPIVQDPIRGSDYTLM 309
           E FR   +LK + I  DP RG DYT+M
Sbjct: 177 ETFREFLYLKAV-ISSDPSRGDDYTVM 202


>12_01_0334 - 2573375-2574634
          Length = 419

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 389 EIFRILGFLKRMPIVQDPIRGSDYTLM 309
           E FR   +LK + I  DP RG DYT+M
Sbjct: 177 ETFREFLYLKAV-ISSDPSRGDDYTVM 202


>05_03_0520 + 14956476-14958179
          Length = 567

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 SPGGVAHERVVTPPDWVLDYWHPLEKAQYPEYFKKREQ 404
           S G V HE  VT PD +      L + ++  Y KKR++
Sbjct: 136 SSGWVMHEYAVTAPDGLASSQLRLYRVRFSGYGKKRKR 173


>04_04_1093 +
           30825722-30826168,30826457-30826608,30826926-30827048,
           30827240-30827384,30828032-30828093,30828373-30828586,
           30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 141 VGGRSTLLNYVKPFYKGYRLFEHE-F*LLKESAPFL 37
           + G+STL +Y+K F++ Y  + H+ F  LKE   +L
Sbjct: 663 IEGKSTLHHYIKVFHEYYVEYGHKVFIELKEHGDYL 698


>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 261 QHPIPKYF-ATSPGGVAHERVVTPPDWVLDYWHP 359
           +H +P  F    PGG+++  V T  DW    WHP
Sbjct: 310 EHYLPTLFNMVDPGGISNWSV-THVDWSEGKWHP 342


>01_07_0373 +
           43136075-43136134,43136223-43136338,43136437-43136500,
           43136602-43136712,43136996-43137103,43137202-43137271,
           43138019-43138086,43138225-43138260,43138455-43138538,
           43138870-43139000,43139123-43139147
          Length = 290

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 336 WVLDYWHPLEKAQ-YPEYFKKREQRKKEFVAM 428
           W L+  H ++ +  Y E  + +EQ KKEF+A+
Sbjct: 120 WDLNELHAVQNSSIYDEAIEHKEQAKKEFLAL 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,621
Number of Sequences: 37544
Number of extensions: 255208
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)