Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m12f
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   0.81 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.5  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 366 KAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDK 467
           K+ Y     K EQ++KE   M E+E  + +  D+
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREHSDR 85


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 PIPKYFATSPGGVAHERVVTPPDWV 341
           P   Y+   PG + + + V P +WV
Sbjct: 141 PYNNYYIWHPGKIVNGKRVPPTNWV 165


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 PIPKYFATSPGGVAHERVVTPPDWV 341
           P   Y+   PG + + + V P +WV
Sbjct: 141 PYNNYYIWHPGKIVNGKRVPPTNWV 165


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 45  AQIPLG-VKTHAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLL 170
           + + LG V  H      LYK+ +   + Y     VY+Y  ++L
Sbjct: 420 SSLELGEVAVHDPVFYQLYKKVMNLYQQYQQSLPVYQYNDLIL 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,302
Number of Sequences: 438
Number of extensions: 2605
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)