Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m11r
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504 77 1e-14
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 43 3e-04
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 31 0.68
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106... 30 1.6
07_01_0942 + 7957776-7958004,7958113-7958708 30 2.1
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 29 3.6
08_01_0480 + 4219844-4220188,4221101-4221250 28 6.4
07_01_0940 + 7944186-7944539,7944723-7945655 28 6.4
12_02_1278 + 27501180-27501190,27502661-27502675,27503299-275034... 28 8.4
>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
Length = 725
Score = 77.4 bits (182), Expect = 1e-14
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Frame = -3
Query: 709 SSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVP-LPLRARYVFCCAPINNKLPFVC 533
+ L+D F C VD S YFMC+ E K +A M++ + L L+ RY FC AP+N + P
Sbjct: 527 NELLDKFRENCRVD-STYFMCHQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAM 585
Query: 532 ATFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRF-P 356
L+ YS++ + S + P S + +L+ LE+ VL +YLWLS+ F
Sbjct: 586 YHLLRFATNYSQSRRV-----SIAMGMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEE 640
Query: 355 DMFPDVKLVRDMETELDAIIQQGI 284
D FP V+ +M + ++ + +
Sbjct: 641 DHFPHVQKAEEMSINIADLLAKSL 664
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -3
Query: 448 LPSPRTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMET 314
L P++ L LES+ VLELY+WLS+R D +PD +L ++
Sbjct: 554 LQVPKSHNQLKELESIHKVLELYVWLSFRLEDSYPDRELAASQKS 598
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = -3
Query: 343 DVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGF-AIGHGSKRVNKMLAGQSM 167
++ LV++ ++ + +++ +L +SEQ+++DE + ++ G K K++ M
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSLNEGLK--EKLII---M 851
Query: 166 GEEKGKLSELLVAR 125
EE KLSE++VA+
Sbjct: 852 AEESTKLSEIIVAK 865
>01_05_0723 +
24607800-24608357,24609616-24610158,24610281-24610697,
24610804-24611244
Length = 652
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -3
Query: 322 METELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKL- 146
M E ++ +GI++ + + EQ++ E + HG +R L G S+G L
Sbjct: 365 MFEETGVLVHRGIYEAAKGIY--EQLM-PEIAAHLAAHG-ERARLRLTGHSLGGSLALLV 420
Query: 145 SELLVARGLITPQML 101
S +LVARG++ P+ L
Sbjct: 421 SLMLVARGVVGPEAL 435
>07_01_0942 + 7957776-7958004,7958113-7958708
Length = 274
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -1
Query: 510 DSTVATSPSPGTG*AAQWSGRCPLLGPYWTSCTWNLSLTS*SFTCG*AIDF 358
D +SPSP + + P G +WTS +W S C + F
Sbjct: 29 DGEAVSSPSPSAAASTPTAASAPTGGSWWTSASWTCPPVRSSGRCPPGVTF 79
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 518 NGETVQSQRAHHPELAERHSGVAAALS 438
NG V S+ HHP + RH G A L+
Sbjct: 192 NGTFVNSRAVHHPNVGSRHWGEPAELA 218
>08_01_0480 + 4219844-4220188,4221101-4221250
Length = 164
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 437 RRGQRPLHCAAQPVPGDG-LVATVLSHHFQEGSTNER*LVIDGRATEHVA 583
RR +RP H PVPG G + S F GS R L + A E A
Sbjct: 28 RRRRRPAHAHRLPVPGAGSAIRLACSSPFLGGSNGSRSLKHNAAAGEKSA 77
>07_01_0940 + 7944186-7944539,7944723-7945655
Length = 428
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 444 PLLGPYWTSCTWNLSLTS 391
P +G +WT C WN +L S
Sbjct: 322 PAIGGFWTHCGWNSTLES 339
>12_02_1278 +
27501180-27501190,27502661-27502675,27503299-27503410,
27504340-27504439,27504579-27504641,27505208-27505318,
27505405-27505589,27506002-27506140,27506374-27506491,
27506568-27506669,27506904-27507158,27507315-27507426,
27507588-27507614
Length = 449
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 20 HNLFPSVPILFRSVYLLVRGEFLLKF 97
+++F +P+LFR ++ GEF+ KF
Sbjct: 186 YSIFMDLPLLFRPKEMVKNGEFIYKF 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,421
Number of Sequences: 37544
Number of extensions: 415790
Number of successful extensions: 1170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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