Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m11r
         (711 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036112-1|AAH36112.1|  786|Homo sapiens suppressor of var1, 3-l...   213   4e-55
AL596223-2|CAH71499.1|  786|Homo sapiens suppressor of var1, 3-l...   213   4e-55
AF042169-1|AAB97370.1|  786|Homo sapiens putative ATP-dependent ...   213   4e-55
AF257238-1|AAG24545.1| 1150|Homo sapiens membrane-associated gua...    31   5.4  

>BC036112-1|AAH36112.1|  786|Homo sapiens suppressor of var1, 3-like 1
            (S. cerevisiae) protein.
          Length = 786

 Score =  213 bits (521), Expect = 4e-55
 Identities = 114/226 (50%), Positives = 146/226 (64%), Gaps = 17/226 (7%)
 Frame = -3

Query: 709  SSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCA 530
            S+L+DIFV    VD   YF+CN + FKF AE+IQH+PL LR RYVFC APIN K PFVC+
Sbjct: 530  SNLIDIFVDFSQVDGQ-YFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCS 588

Query: 529  TFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRFPDM 350
            + L+  RQYSRNEP+T  WL   ++WPL  P+ I DL+ LE+V DVL+LYLWLSYRF DM
Sbjct: 589  SLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDM 648

Query: 349  FPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSK---------- 200
            FPD  L+RD++ ELD IIQ G+  IT+L++ SE        GF  G  S+          
Sbjct: 649  FPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQAR 708

Query: 199  --RVNKML---AGQSMGEEKGKLS--ELLVARGLITPQMLKKLQQE 83
              R  K L   A +    + G+LS    LV +GL+TP MLK+L++E
Sbjct: 709  RTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKE 754


>AL596223-2|CAH71499.1|  786|Homo sapiens suppressor of var1, 3-like 1
            (S. cerevisiae) protein.
          Length = 786

 Score =  213 bits (521), Expect = 4e-55
 Identities = 114/226 (50%), Positives = 146/226 (64%), Gaps = 17/226 (7%)
 Frame = -3

Query: 709  SSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCA 530
            S+L+DIFV    VD   YF+CN + FKF AE+IQH+PL LR RYVFC APIN K PFVC+
Sbjct: 530  SNLIDIFVDFSQVDGQ-YFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCS 588

Query: 529  TFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRFPDM 350
            + L+  RQYSRNEP+T  WL   ++WPL  P+ I DL+ LE+V DVL+LYLWLSYRF DM
Sbjct: 589  SLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDM 648

Query: 349  FPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSK---------- 200
            FPD  L+RD++ ELD IIQ G+  IT+L++ SE        GF  G  S+          
Sbjct: 649  FPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQAR 708

Query: 199  --RVNKML---AGQSMGEEKGKLS--ELLVARGLITPQMLKKLQQE 83
              R  K L   A +    + G+LS    LV +GL+TP MLK+L++E
Sbjct: 709  RTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKE 754


>AF042169-1|AAB97370.1|  786|Homo sapiens putative ATP-dependent
            mitochondrial RNA helicase protein.
          Length = 786

 Score =  213 bits (521), Expect = 4e-55
 Identities = 114/226 (50%), Positives = 146/226 (64%), Gaps = 17/226 (7%)
 Frame = -3

Query: 709  SSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCA 530
            S+L+DIFV    VD   YF+CN + FKF AE+IQH+PL LR RYVFC APIN K PFVC+
Sbjct: 530  SNLIDIFVDFSQVDGQ-YFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCS 588

Query: 529  TFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRFPDM 350
            + L+  RQYSRNEP+T  WL   ++WPL  P+ I DL+ LE+V DVL+LYLWLSYRF DM
Sbjct: 589  SLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDM 648

Query: 349  FPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSK---------- 200
            FPD  L+RD++ ELD IIQ G+  IT+L++ SE        GF  G  S+          
Sbjct: 649  FPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQAR 708

Query: 199  --RVNKML---AGQSMGEEKGKLS--ELLVARGLITPQMLKKLQQE 83
              R  K L   A +    + G+LS    LV +GL+TP MLK+L++E
Sbjct: 709  RTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKE 754


>AF257238-1|AAG24545.1| 1150|Homo sapiens membrane-associated
           guanylate kinase MAGI3 protein.
          Length = 1150

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 582 RARSGNGTCCIISAKNLNPS 641
           R   G GTCCI+S K  NPS
Sbjct: 49  REEPGGGTCCIVSGKAPNPS 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,802,489
Number of Sequences: 237096
Number of extensions: 2136238
Number of successful extensions: 5259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5256
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)