Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m11r
         (711 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p pro...   278   5e-75
AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA, ...   258   4e-69
AE014135-95|AAF59336.2|  468|Drosophila melanogaster CG1970-PA p...    29   4.7  

>AY058527-1|AAL13756.1|  499|Drosophila melanogaster LD23445p
           protein.
          Length = 499

 Score =  278 bits (682), Expect = 5e-75
 Identities = 131/209 (62%), Positives = 163/209 (77%)
 Frame = -3

Query: 709 SSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCA 530
           S+LMDIFV+LCTVDDSLYFMCN E FKFLAEMIQHV LPLRARYVFCCAPIN K+PFVC+
Sbjct: 253 SNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFCCAPINRKMPFVCS 312

Query: 529 TFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRFPDM 350
            FLK+ RQYSRNEPIT +++     WP   P+TILDLVHLE+VFDV++LYLWLSYRF D+
Sbjct: 313 MFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFMDL 372

Query: 349 FPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQS 170
           FP+   VRD + ELD IIQQG+FQITRLL+N+E     E S +AI    +R+  +   + 
Sbjct: 373 FPEAAYVRDAQKELDEIIQQGVFQITRLLKNTEASQDGETSNYAI----RRITHVKEPRL 428

Query: 169 MGEEKGKLSELLVARGLITPQMLKKLQQE 83
               +G+L+E L+A+GL+TP ML +L++E
Sbjct: 429 PSLSRGRLTERLLAQGLLTPGMLSELRKE 457


>AE014297-48|AAF52149.2|  758|Drosophila melanogaster CG9791-PA,
            isoform A protein.
          Length = 758

 Score =  258 bits (633), Expect = 4e-69
 Identities = 126/209 (60%), Positives = 158/209 (75%)
 Frame = -3

Query: 709  SSLMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCA 530
            S+LMDIFV+LCTVDDSLYFMCN E FKFLAEMIQHV LPLRARYVFCCAPIN K+PFVC+
Sbjct: 517  SNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFCCAPINRKMPFVCS 576

Query: 529  TFLKMVRQYSRNEPITRNWLSGTVEWPLPSPRTILDLVHLESVFDVLELYLWLSYRFPDM 350
             FLK+ RQYSRNEPIT +++     WP   P+TILDLVHLE+VFDV++L     YRF D+
Sbjct: 577  MFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDL-----YRFMDL 631

Query: 349  FPDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQS 170
            FP+   VRD + ELD IIQQG+FQITRLL+N+E     E S +AI    +R+  +   + 
Sbjct: 632  FPEAAYVRDAQKELDEIIQQGVFQITRLLKNTEASQDGETSNYAI----RRITHVKEPRL 687

Query: 169  MGEEKGKLSELLVARGLITPQMLKKLQQE 83
                +G+L+E L+A+GL+TP ML +L++E
Sbjct: 688  PSLSRGRLTERLLAQGLLTPGMLSELRKE 716


>AE014135-95|AAF59336.2|  468|Drosophila melanogaster CG1970-PA
           protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 667 DSLYFMCNTEGFKFLAEMIQHVPLPLRARYV 575
           D +  MCN + +    E + ++ +PLRA+Y+
Sbjct: 145 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYI 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,062,518
Number of Sequences: 53049
Number of extensions: 679312
Number of successful extensions: 1659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)