Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m11r
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 143 1e-34
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 143 1e-34
AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical ... 28 5.7
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 28 5.7
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 28 5.7
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical protein
C08F8.2b protein.
Length = 719
Score = 143 bits (347), Expect = 1e-34
Identities = 75/210 (35%), Positives = 120/210 (57%), Gaps = 1/210 (0%)
Frame = -3
Query: 703 LMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATF 524
L+D+FV +C+V D +F+C + LA +I +PLPL+ RY FC +P+N + A F
Sbjct: 510 LLDLFVSVCSVSDH-FFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVF 568
Query: 523 LKMVRQYSRNEPITRNWLSGTVEWPLPSPRTIL-DLVHLESVFDVLELYLWLSYRFPDMF 347
+KM R++S + +T WL +EWP P P T L +L LE +++L+ Y+WLS RFPDM
Sbjct: 569 VKMARRFSTGQALTYEWLIDMLEWP-PKPATTLNELSLLEQNYEILDQYMWLSMRFPDML 627
Query: 346 PDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSM 167
PD VR+ LD++IQ+G+ LL S + +G + KR N + +
Sbjct: 628 PDEPRVREASKHLDSMIQEGVESFMSLL--SVGATESKAAGSSKSSEGKRENPSKSEREK 685
Query: 166 GEEKGKLSELLVARGLITPQMLKKLQQELS 77
++ + E L+ R I+ L++L++EL+
Sbjct: 686 PNKRSSILEALLKRADISEDDLEQLREELN 715
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical protein
C08F8.2a protein.
Length = 721
Score = 143 bits (347), Expect = 1e-34
Identities = 75/210 (35%), Positives = 120/210 (57%), Gaps = 1/210 (0%)
Frame = -3
Query: 703 LMDIFVHLCTVDDSLYFMCNTEGFKFLAEMIQHVPLPLRARYVFCCAPINNKLPFVCATF 524
L+D+FV +C+V D +F+C + LA +I +PLPL+ RY FC +P+N + A F
Sbjct: 512 LLDLFVSVCSVSDH-FFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVF 570
Query: 523 LKMVRQYSRNEPITRNWLSGTVEWPLPSPRTIL-DLVHLESVFDVLELYLWLSYRFPDMF 347
+KM R++S + +T WL +EWP P P T L +L LE +++L+ Y+WLS RFPDM
Sbjct: 571 VKMARRFSTGQALTYEWLIDMLEWP-PKPATTLNELSLLEQNYEILDQYMWLSMRFPDML 629
Query: 346 PDVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSM 167
PD VR+ LD++IQ+G+ LL S + +G + KR N + +
Sbjct: 630 PDEPRVREASKHLDSMIQEGVESFMSLL--SVGATESKAAGSSKSSEGKRENPSKSEREK 687
Query: 166 GEEKGKLSELLVARGLITPQMLKKLQQELS 77
++ + E L+ R I+ L++L++EL+
Sbjct: 688 PNKRSSILEALLKRADISEDDLEQLREELN 717
>AF101309-3|AAN60514.1| 760|Caenorhabditis elegans Hypothetical
protein H24G06.1c protein.
Length = 760
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 518 NGETVQSQRAHHPELAERHSGVAAALS*DHTGPRALGIC 402
NG+TV+ + ++A HSG ++ DH+G A+ +C
Sbjct: 650 NGKTVREVKGTDDDVA--HSGKILKVAIDHSGSYAISVC 686
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 518 NGETVQSQRAHHPELAERHSGVAAALS*DHTGPRALGIC 402
NG+TV+ + ++A HSG ++ DH+G A+ +C
Sbjct: 650 NGKTVREVKGTDDDVA--HSGKILKVAIDHSGSYAISVC 686
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 518 NGETVQSQRAHHPELAERHSGVAAALS*DHTGPRALGIC 402
NG+TV+ + ++A HSG ++ DH+G A+ +C
Sbjct: 650 NGKTVREVKGTDDDVA--HSGKILKVAIDHSGSYAISVC 686
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/61 (18%), Positives = 31/61 (50%)
Frame = -3
Query: 307 DAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKLSELLVA 128
D ++QG+ + + L+N++ I D + +GHG + + ++ ++ ++ + A
Sbjct: 612 DDKVEQGVALMRKSLKNADNEITDPKFYYQLGHGLTTLGRKSEADAVYQKAAQMGVFMTA 671
Query: 127 R 125
+
Sbjct: 672 Q 672
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/61 (18%), Positives = 31/61 (50%)
Frame = -3
Query: 307 DAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLAGQSMGEEKGKLSELLVA 128
D ++QG+ + + L+N++ I D + +GHG + + ++ ++ ++ + A
Sbjct: 612 DDKVEQGVALMRKSLKNADNEITDPKFYYQLGHGLTTLGRKSEADAVYQKAAQMGVFMTA 671
Query: 127 R 125
+
Sbjct: 672 Q 672
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,821
Number of Sequences: 27780
Number of extensions: 321494
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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