Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m11f
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    29   0.48 
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.4  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   4.4  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = +1

Query: 91  LHNVEKLQLNVSNLRCNILCARKLKPAGIGYILVRTKKHDRNPSALFVPVPVKPNSDDIN 270
           +  VE+L+  +   R  +L   +L+ A  G      K+ DR      VP    PN D   
Sbjct: 34  MKRVEQLRREIEEER-QLLELHRLQEAAGG-----KKRKDRVEWMYAVPNTNGPNRDSSE 87

Query: 271 IGEEFTGRLKKQDLLK----ILNKFYQKPEIRVLASENGLDD 384
           + E   GR +  DLLK      N   +K E   L + N L D
Sbjct: 88  MEEYLLGRRRLDDLLKDKIEDQNNSLEKTEFIALQNANSLQD 129


>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 295 LKKQDLLKILNKFYQKPEIRVLASENGLDDQLLHQAF 405
           L K  L++ L + Y     + +  ENGLDD L+ QAF
Sbjct: 123 LSKTVLVRQLAEIYFANSNKYVVDENGLDD-LIQQAF 158


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +1

Query: 178 GYILVRTKKHDRNPSALFVPVPVKPNSDDINIGEEFTGRLKKQDLLKILNKFYQKPEIRV 357
           G++   T   D  P+A+   V      D++    + +G L + DLL++ +K     ++R 
Sbjct: 305 GFVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRG 364

Query: 358 LASENGLD 381
           L    G++
Sbjct: 365 LGLLQGIE 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,885
Number of Sequences: 5004
Number of extensions: 48619
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)