Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m11f
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0542 - 9348126-9349585,9352433-9352655                           30   1.1  
04_01_0359 + 4711289-4713052,4713423-4713950                           28   4.5  
12_02_0342 - 17742326-17742356,17742503-17742621,17743148-177431...    27   7.9  
10_01_0054 - 773395-774518,776957-777124,777455-778376                 27   7.9  
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415...    27   7.9  
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    27   7.9  

>03_02_0542 - 9348126-9349585,9352433-9352655
          Length = 560

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 VKPNSDDINIG-EEFTGRLKKQDLLKILNKFYQKPEIR 354
           VK  + D ++G E+F GR+ K  + + L K Y++PEIR
Sbjct: 235 VKATAGDTHLGGEDFNGRMVKHLVREFLRK-YKRPEIR 271


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 562 LPSSQGAEMLVLHASRSMETNHQHVLHL 479
           +PS  G+EM++ H  R MET   + L +
Sbjct: 215 MPSESGSEMILTHQLRQMETEDSNSLSI 242


>12_02_0342 -
           17742326-17742356,17742503-17742621,17743148-17743175,
           17743971-17744063,17744517-17744628,17745593-17745729,
           17745924-17745958,17746938-17747000
          Length = 205

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 294 TSCKFFTNVYVIGVWFHWHWHK 229
           T+C     +  +  WFHW WH+
Sbjct: 102 TACLSIQELRSLVSWFHWLWHR 123


>10_01_0054 - 773395-774518,776957-777124,777455-778376
          Length = 737

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +1

Query: 244 VKPNSDDIN---IGEEFTGRLKKQDLLKILNKF-YQKPEIRVLASENGLDDQLLHQAFLS 411
           +K NSD I     G+ + GRLK   L+ +       +       +E  +  Q++H   + 
Sbjct: 418 LKNNSDIIGEGGFGKVYKGRLKDDTLVAVKTSIEVNEARKEDFTNEVIIQSQMMHNNIIK 477

Query: 412 FRRHCLEHDLP 444
               CLE D+P
Sbjct: 478 LLGCCLEVDVP 488


>04_03_0772 -
           19438910-19439209,19439692-19439828,19441334-19441570,
           19441948-19442149,19442761-19442858,19443082-19443665,
           19443725-19443882
          Length = 571

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 316 KILNKFYQKPEIRVLASENGLDDQLLHQAFLSFRRHCLEHD 438
           +I  K   + ++R +  E  L  QL H+  + F  HC  HD
Sbjct: 288 EIAVKKLTRKDLREVEREVSLVAQLQHENIVKFLGHCFRHD 328


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +1

Query: 274 GEEFTGRLKKQDLLKIL-NKFYQKPEIRVLASENGLDDQLLHQAFLSFRRHCLEHDLPPD 450
           G  + G L  Q ++ I  +K  ++ EI    +E  +  Q++H+  +     CLE ++P  
Sbjct: 612 GTVYKGILSDQRVVAIKRSKIVEQSEIDQFVNEVAILSQIIHRNVVKLFGCCLESEVPLL 671

Query: 451 LHITISD-ILQGAGHVD 498
           ++  IS+  L G  H D
Sbjct: 672 VYEFISNGTLHGLLHGD 688


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,788
Number of Sequences: 37544
Number of extensions: 288841
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)