Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m11f
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30091| Best HMM Match : MobB (HMM E-Value=0.1)                      34   0.093
SB_178| Best HMM Match : DUF201 (HMM E-Value=3.3)                      29   2.6  
SB_59661| Best HMM Match : PMP22_Claudin (HMM E-Value=0.26)            29   2.6  
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)                   27   8.1  

>SB_30091| Best HMM Match : MobB (HMM E-Value=0.1)
          Length = 626

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +1

Query: 82  ILALHNVEKL-QLNVSNLRCN---ILCARKLKPAGIGYILVRTKKHDRNPSALFVPVPVK 249
           +LALH  EK  +LN+  ++C+    L A+ L     G  LVR    D     +   + + 
Sbjct: 512 LLALHYFEKARELNIETMKCSERWFLRAKVLWLVSRGRCLVRKGNTDIGLQQIEKGLGIL 571

Query: 250 PNSDDINIGEEFTGRLKKQDLLKILNKFYQKPEIRVLASENGLDDQL 390
              D+    ++ TG+  K  LLK +   Y   E+   A    +D QL
Sbjct: 572 RAEDNPKRSKKSTGKDPKDKLLKAVCLAYLAGEVNRYAERGQMDRQL 618


>SB_178| Best HMM Match : DUF201 (HMM E-Value=3.3)
          Length = 847

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 334 YQKPEIRVLASENGLDDQLLHQAFLSFRRHCLEHDLPPDLH 456
           YQ+P+IRV + EN  D  L+   F        +H L PDLH
Sbjct: 554 YQEPDIRVYSKENTGDAPLI-MVFPHQNISREKHALDPDLH 593


>SB_59661| Best HMM Match : PMP22_Claudin (HMM E-Value=0.26)
          Length = 680

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 460 TISDILQGAGHVDDLFPYFLRHARRAFPHLDC 555
           T+ DI Q   HV+  FP F++   + F HL C
Sbjct: 614 TVEDITQ---HVEHNFPRFMKPVTKVFTHLPC 642


>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
          Length = 1259

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 454 HITISDILQGAGHVDDL-FPYFLRHARRAF 540
           H +++ ++    HV+ L F Y+LRH R +F
Sbjct: 778 HFSLAPLVSQYAHVETLTFSYYLRHGRPSF 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,955,367
Number of Sequences: 59808
Number of extensions: 344076
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)