Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m10f
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39) 57 1e-08
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 32 0.30
SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17) 30 1.2
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) 29 2.8
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 29 3.7
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 27 8.5
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 8.5
>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +1
Query: 139 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDH 318
V +AAI G DG+ WA S GF +S+ E +++ ++ S+ TI G +Y+ L
Sbjct: 7 VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63
Query: 319 --IIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGEYLITCGY 468
I KL G C+ T+QA+VI YEE +VVE+L +YL GY
Sbjct: 64 SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117
>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
Length = 571
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Frame = +1
Query: 109 VDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAG 285
VD+ L+ + V KA+I G +G +A S GF + E ++A + T GV +
Sbjct: 450 VDESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNR 509
Query: 286 TRYIYLS-GTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITC 462
T+Y + H + + G G + T Q ++I Y E + P ++V EKL +Y
Sbjct: 510 TKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVN 569
Query: 463 GY 468
G+
Sbjct: 570 GF 571
>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 39.1 bits (87), Expect = 0.003
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Frame = +1
Query: 91 MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 240
MSW Y+D L ++ T KA I G DG W + ++ +E KI F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171
Query: 241 ENESLLT--SGGVTIAGTRYIYLSGTDH--IIRAKLGKVGVHCMKTQQAVVISLYEEPIQ 408
+N+ + S G+ G +Y +L D ++ K + ++ A+VI +E Q
Sbjct: 172 KNKDFTSFMSSGIHAEGEKYQFLREEDGKLVLGKKKDHGAITIQASKTALVIGHTKEGGQ 231
Query: 409 PQQAASVVEKLGEYLITCG 465
V + EYL + G
Sbjct: 232 QGNTNKAVAVIAEYLESLG 250
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +1
Query: 217 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE 396
++ +V F + + G+ Y + + K K G+ +KT ++++LY
Sbjct: 1 MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60
Query: 397 EPIQPQQAASVVEKLG 444
+ + P EKLG
Sbjct: 61 QEMSPSICVEASEKLG 76
>SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)
Length = 179
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = +1
Query: 103 DYVDKQLMASRCVTKAAIAGHDGN------VWAKSEG-FEISKD-EVAKIVAGFENESLL 258
DY D + ++ T+ IA +DG W + G + + KD VAK G +
Sbjct: 37 DYRDVVIYIAQNTTRTGIAVNDGQWHHLCVTWENTAGSWRLYKDGRVAKSGTGLSQGEQI 96
Query: 259 TSGGVTIAGTRYIYLSGTDHIIRAKLGKV 345
GG + G L G H ++ +G++
Sbjct: 97 DGGGAVVLGNEQDMLGGGFHQTQSFIGEM 125
>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 378 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHAAT 262
HSL C +A LA +R ++CAT P A RH+ T
Sbjct: 71 HSLECTIRCNAPLAVMR-HSLLCATRCHAPLAVMRHSRT 108
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 378 HSLLCLHAMHADLAKLRADDMVCATEVDVPRARYRHA 268
HSLLC +A LA +R ++CA P A RH+
Sbjct: 37 HSLLCATRCYAPLAVMR-HSLLCAIRCYAPLAVMRHS 72
>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
Length = 355
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 112 DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 288
D LMA + A+A G+ W+ G I K +++ + T+GGVTI GT
Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 163 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 309
H G W ++G EI D + ++ GF L +GG + G Y L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 372 SCGHFSL*RTHPTSAGR----ICRGEVRRIFNYLWLLEVEARRDLRVL*DNIFSTGK*VT 539
+C F + R HP A + + R RR+ +L L+E+E +DLR+ D+ + K +
Sbjct: 205 TCFRFRM-RYHPREAAQRQKELQRSVRRRLNCFLELMEMELSKDLRLEVDHSDAIVKFLD 263
Query: 540 AFCIFYKVIRGPFI 581
A C + ++ F+
Sbjct: 264 ADCCMFTKLKTRFL 277
>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 103 DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 279
D++ +Q+ S C+ A+A G K F + D ++V + ++L TS + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 273 DDSGHAVHLPQWHRPYHPREAWQ-GRR 350
DD+ A P W +P H + AW+ G+R
Sbjct: 256 DDTLRARRPPAWRQPVHAKSAWRTGKR 282
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 242 SKPATIFATSSFEISKPSD 186
S P IFA SSF I KPSD
Sbjct: 275 SPPLEIFAPSSFFIKKPSD 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,306,758
Number of Sequences: 59808
Number of extensions: 384804
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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