Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m09f
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.53 
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   1.2  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   1.2  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    26   1.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    23   8.6  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +3

Query: 18  HSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNY 197
           H+S   R+++HS  HS++   LS+   LT SS    ++    Y    +  +T+  +    
Sbjct: 425 HNSTSSRSSSHSSSHSLSS--LSSKPILTASSSSLLTSSSHTYERSTVYVVTVETVSSGS 482

Query: 198 NALIRKSKRTLTITV 242
           +    +S +T  + V
Sbjct: 483 STYASQSTQTSILLV 497


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 135 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 272
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 135 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 272
           +E  +  Y     I Q K  YNA     ++R S R +T  + +SR++ +YV
Sbjct: 24  REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74


>SPAC25B8.15c |||wybutosine biosynthesis protein
          Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 14 EPFKSVVPDNKPFGYPFDRPVLP 82
          E  KS VPD  P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 18  HSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYS 149
           +SSL+  +T+ +   S++   LST N  + SS  S +  K + S
Sbjct: 495 NSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLS 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,395
Number of Sequences: 5004
Number of extensions: 23332
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)