Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m09f
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0340 + 24517562-24520318                                         27   3.4  
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957     27   4.5  

>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/74 (20%), Positives = 37/74 (50%)
 Frame = +3

Query: 81  LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRIS 260
           L+T  +   +  RSW  +++ +SP+     TI+ +     A   KS+    +   ++ ++
Sbjct: 169 LATIRSRKEADNRSWCIVEQVFSPLLKLLKTINHLVSEAAARNNKSENYKILVKIDAEVN 228

Query: 261 CEYVKTVANVINKN 302
           C  ++   ++I++N
Sbjct: 229 C--LQDALDLIDRN 240


>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
          Length = 533

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = +3

Query: 72  PFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYN 200
           PF L    N  C S R  S MKEN     L+ L   QIK N N
Sbjct: 409 PFNLDALENEKCLSMRFLSAMKEN----KLSDLLDDQIKNNEN 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,136,347
Number of Sequences: 37544
Number of extensions: 122824
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)