Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m09f
(323 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 34 0.030
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 31 0.28
SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5) 30 0.38
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1) 28 1.5
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13) 27 2.6
SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2) 27 2.6
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_28375| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_9235| Best HMM Match : TolA (HMM E-Value=0.33) 26 6.1
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 26 8.1
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_14797| Best HMM Match : RVT_1 (HMM E-Value=7.9e-33) 26 8.1
SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29) 26 8.1
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8) 26 8.1
SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06) 26 8.1
SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36) 26 8.1
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 33.9 bits (74), Expect = 0.030
Identities = 24/94 (25%), Positives = 48/94 (51%)
Frame = +3
Query: 33 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 212
+ T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L
Sbjct: 76 YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-- 130
Query: 213 KSKRTLTITVYNSRISCEYVKTVANVINKN*KYL 314
SK LT++ S +S Y+ N + + K L
Sbjct: 131 -SKNYLTLSKNYSTLSKNYLTLSKNYLTLSIKLL 163
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 78 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 242
+L+ S N S + +T+ +NYS + +LT ++ + +NY+ L SK LT++
Sbjct: 69 YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125
Query: 243 YNSRISCEYVKTVANVINKN*KYL 314
S +S Y+ N + YL
Sbjct: 126 NYSTLSKNYLTLSKNYSTLSKNYL 149
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 90 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 269
S N S + +T+ +NYS + +LT + +NY+ L SK LT++ S +S Y
Sbjct: 2 SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55
Query: 270 VKTVANVINKN*KYL 314
+ N + + YL
Sbjct: 56 LTLSKNYLTLSKNYL 70
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +3
Query: 81 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRK----SKRTLTITVYN 248
L+T + + R++ T+ +NYS + +LT + +NY+ L + SK LT++
Sbjct: 13 LNTLSKNYSTLSRNYLTLSKNYSTLSKNYLT---LSKNYSTLSKNYLTLSKNYLTLSKNY 69
Query: 249 SRISCEYVK---TVANVINKN*KYLKK 320
+S Y+ V N ++KN L K
Sbjct: 70 LTLSKNYLTLSIKVLNTLSKNYSTLSK 96
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/54 (22%), Positives = 34/54 (62%)
Frame = +3
Query: 33 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 194
+ T + ++++++ +L+ S L + ++ ST+++NYS + +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 90 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 269
S N S + +T+ +NYS + +LT + +NY+ L SK LT++ S +S Y
Sbjct: 2 SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55
Query: 270 VKTVANVINKN*KYL 314
+ N + + YL
Sbjct: 56 LTLSKNYLTLSKNYL 70
Score = 29.1 bits (62), Expect = 0.87
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +3
Query: 78 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 242
+L+ S N S + +T+ +NYS + +LT ++ + +NY+ L SK LT++
Sbjct: 69 YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125
Query: 243 YNSRISCEY 269
S +S Y
Sbjct: 126 NYSTLSKNY 134
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +3
Query: 81 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRK----SKRTLTITVYN 248
L+T + + R++ T+ +NYS + +LT + +NY+ L + SK LT++
Sbjct: 13 LNTLSKNYSTLSRNYLTLSKNYSTLSKNYLT---LSKNYSTLSKNYLTLSKNYLTLSKNY 69
Query: 249 SRISCEYVK---TVANVINKN*KYLKK 320
+S Y+ V N ++KN L K
Sbjct: 70 LTLSKNYLTLSIKVLNTLSKNYSTLSK 96
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 33 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNAL 206
+ T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L
Sbjct: 76 YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL 130
>SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)
Length = 404
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +3
Query: 9 SQSHSSLLFRTTNH----SVIHSIAPFFLSTSNNLTCS--SRRSWSTMKENYSPIYLTFL 170
S + SLL+R +NH S+ + + +S+S +TCS + W + P+Y F+
Sbjct: 254 SATGRSLLYRVSNHADYVSIAYRLIRAMMSSSLGVTCSPITWTIWLACRTREMPVYTAFV 313
Query: 171 TIH 179
H
Sbjct: 314 MQH 316
>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
Length = 355
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 51 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRT 227
S+ AP L+T+NN TC+ R+ + PI + +L H K+ L + K T
Sbjct: 19 SITTEDAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKAT 76
Query: 228 LTITVYN-SRISCEYVKTVANVINKN 302
T+ YN + + Y + A V + N
Sbjct: 77 ATMWHYNIAAFAIIYYTSCATVWHYN 102
>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
Length = 553
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 89 FKQPNMFFKKVLVYHEGELFPY 154
FKQ N++ VLV +G+L+PY
Sbjct: 99 FKQVNVWVNGVLVKAQGDLYPY 120
>SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)
Length = 116
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 41 NKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTP 181
N F + DRP+L +QP K ++ G + Y F +P +P
Sbjct: 24 NSNFAFISDRPILEYIARQPEYCGKLKVIGGFGSTYGYGFALPLNSP 70
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 15 SHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT 173
S + L + +N + +IAP T +N T +S+ +W T N + T T
Sbjct: 377 SKPAWLTQNSNTTTTTTIAPAPEGTKSNTTVTSKPAWLTQNSNTTTTTSTIAT 429
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 15 SHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKEN 143
S + L + N + +IAP T +N T +S+ +W T N
Sbjct: 345 SKPAWLTQNPNTTTTTTIAPAAEGTKSNTTVTSKPAWLTQNSN 387
>SB_28375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 41 NKPFGYPFDRPVLPQY 88
N P GYP RP+L QY
Sbjct: 47 NPPHGYPRRRPILSQY 62
>SB_9235| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 579
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 78 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRI 257
FLS ++ ++ + + +KE Y+P +LT Q NY LT T + S++
Sbjct: 101 FLSLQQSILADTKEAVNLLKELYTPWHLTDDDGVQAHSNYPCNSATMDGCLTFTQFFSQV 160
Query: 258 SCEYV 272
++
Sbjct: 161 GYIFI 165
>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 15 SHSSLLFRTTNHSVIHSIAPFFLSTS---NNLTCSSRR 119
+ SL + T H+ +HS AP L+ + NN C S++
Sbjct: 392 TQESLYYTRTRHTFLHSSAPTSLTPTVDQNNNCCLSKK 429
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -1
Query: 311 IFLVFINDISNS-----FYIFT*DSTVIYCYS*SSLTFSYESIIVALYLVYSEEC 162
+FL++IND +NS F IF DS + YS +LT ++ L +Y+ C
Sbjct: 408 LFLLYINDFNNSSQTLDFNIFADDSNLF--YSNKNLTNLESTVNYELKHIYTWLC 460
>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1607
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 33 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMK 137
FR+++ SV+ S P LSTS + T + ST+K
Sbjct: 165 FRSSSSSVLQSYTPVGLSTSASKTFGNIVDGSTIK 199
>SB_14797| Best HMM Match : RVT_1 (HMM E-Value=7.9e-33)
Length = 252
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -1
Query: 311 IFLVFINDISNS-----FYIFT*DSTVIYCYS*SSLTFSYESIIVALYLVYSEEC 162
+FL++IND +NS F IF DS + YS +LT ++ L +Y+ C
Sbjct: 174 LFLLYINDFNNSSQILDFNIFADDSNLF--YSNKNLTNLESTVKYELKHIYTWLC 226
>SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)
Length = 382
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -1
Query: 311 IFLVFINDISNS-----FYIFT*DSTVIYCYS*SSLTFSYESIIVALYLVYSEEC 162
+FL++IND +NS F IF DS + YS +LT ++ L +Y+ C
Sbjct: 308 LFLLYINDFNNSSQTLDFNIFADDSNLF--YSNKNLTNLESTVNYELKHIYTWLC 360
>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
Length = 1699
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 33 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMK 137
FR+++ SV+ S P LSTS + T + ST+K
Sbjct: 111 FRSSSSSVLQSYTPVGLSTSASKTFGNIVDGSTIK 145
>SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)
Length = 473
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 29 VVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEG 139
V+ +P+G P D +LP+ KQ V +H G
Sbjct: 131 VIKPTEPYGLPLDFTLLPKKLKQAGYATHMVGKWHLG 167
>SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)
Length = 399
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 69 APFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIK 188
AP +S N T S +WS +KEN S + + ++++
Sbjct: 5 APERISGYNTSTFSINVTWSALKENVSGVLRGYTVFYRMR 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,739,026
Number of Sequences: 59808
Number of extensions: 154763
Number of successful extensions: 548
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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