Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m09f
(323 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X07024-1|CAA30073.1| 1554|Homo sapiens CCG1 protein protein. 27 9.8
D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein. 27 9.8
BC060861-1|AAH60861.1| 580|Homo sapiens chromosome 3 open readi... 27 9.8
AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II,... 27 9.8
AM711893-1|CAM98556.1| 491|Homo sapiens dystonia 3 (with Parkin... 27 9.8
AM711892-1|CAM98555.1| 246|Homo sapiens dystonia 3 (with Parkin... 27 9.8
AK092147-1|BAC03816.1| 580|Homo sapiens protein ( Homo sapiens ... 27 9.8
AK027472-1|BAB55137.1| 438|Homo sapiens protein ( Homo sapiens ... 27 9.8
AJ555149-1|CAD87528.2| 246|Homo sapiens putative DYT3 protein p... 27 9.8
AJ555148-1|CAD87527.2| 457|Homo sapiens putative DYT3 protein p... 27 9.8
AJ549250-1|CAD70493.3| 455|Homo sapiens putative DYT3 protein p... 27 9.8
AJ549249-1|CAD70492.2| 335|Homo sapiens putative DYT3 protein p... 27 9.8
AJ549248-1|CAD70491.3| 489|Homo sapiens putative DYT3 protein p... 27 9.8
AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor R... 27 9.8
AB209316-1|BAD92553.1| 1070|Homo sapiens TBP-associated factor 1... 27 9.8
>X07024-1|CAA30073.1| 1554|Homo sapiens CCG1 protein protein.
Length = 1554
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 1466 VPDSWPFHHPVNKKFVPDYYK 1486
>D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 1522 VPDSWPFHHPVNKKFVPDYYK 1542
>BC060861-1|AAH60861.1| 580|Homo sapiens chromosome 3 open reading
frame 39 protein.
Length = 580
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 140 ELFPYLFNIPHYTPDK 187
ELFPY N HYTP K
Sbjct: 363 ELFPYAVNPDHYTPYK 378
>AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, 250kD
protein.
Length = 1893
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 1543 VPDSWPFHHPVNKKFVPDYYK 1563
>AM711893-1|CAM98556.1| 491|Homo sapiens dystonia 3 (with
Parkinsonism) protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 176 VPDSWPFHHPVNKKFVPDYYK 196
>AM711892-1|CAM98555.1| 246|Homo sapiens dystonia 3 (with
Parkinsonism) protein.
Length = 246
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 176 VPDSWPFHHPVNKKFVPDYYK 196
>AK092147-1|BAC03816.1| 580|Homo sapiens protein ( Homo sapiens
cDNA FLJ34828 fis, clone NT2NE2009295. ).
Length = 580
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 140 ELFPYLFNIPHYTPDK 187
ELFPY N HYTP K
Sbjct: 363 ELFPYAVNPDHYTPYK 378
>AK027472-1|BAB55137.1| 438|Homo sapiens protein ( Homo sapiens
cDNA FLJ14566 fis, clone NT2RM4000324. ).
Length = 438
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 140 ELFPYLFNIPHYTPDK 187
ELFPY N HYTP K
Sbjct: 221 ELFPYAVNPDHYTPYK 236
>AJ555149-1|CAD87528.2| 246|Homo sapiens putative DYT3 protein
protein.
Length = 246
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 176 VPDSWPFHHPVNKKFVPDYYK 196
>AJ555148-1|CAD87527.2| 457|Homo sapiens putative DYT3 protein
protein.
Length = 457
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 176 VPDSWPFHHPVNKKFVPDYYK 196
>AJ549250-1|CAD70493.3| 455|Homo sapiens putative DYT3 protein
protein.
Length = 455
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 176 VPDSWPFHHPVNKKFVPDYYK 196
>AJ549249-1|CAD70492.2| 335|Homo sapiens putative DYT3 protein
protein.
Length = 335
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 25 VPDSWPFHHPVNKKFVPDYYK 45
>AJ549248-1|CAD70491.3| 489|Homo sapiens putative DYT3 protein
protein.
Length = 489
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 176 VPDSWPFHHPVNKKFVPDYYK 196
>AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor RNA
polymerase 1-like protein.
Length = 1826
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 1541 VPDSWPFHHPVNKKFVPDYYK 1561
>AB209316-1|BAD92553.1| 1070|Homo sapiens TBP-associated factor 1
isoform 2 variant protein.
Length = 1070
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 32 VPDNKPFGYPFDRPVLPQYFK 94
VPD+ PF +P ++ +P Y+K
Sbjct: 686 VPDSWPFHHPVNKKFVPDYYK 706
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,580,323
Number of Sequences: 237096
Number of extensions: 773932
Number of successful extensions: 1363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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