Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m09f
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical p...    28   1.3  
Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    28   1.8  
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    28   1.8  
U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   1.8  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    27   3.1  
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF039051-3|AAB94261.2|  347|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U64848-7|ABS83846.1|  144|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    26   7.2  
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    25   9.5  
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated...    25   9.5  

>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 183 IKRNYNALIRKSKRTLTITVYNSRISCEYVKTVANVINKN 302
           I RN         + +T  V NS + C + +TV N++N +
Sbjct: 21  IPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNND 60


>Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical
           protein C47E12.14 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 213 KSKRTLTITVYNSRISCEYVKTVANVINK 299
           KSK TL   ++ +R+S ++VKT  NV +K
Sbjct: 58  KSKFTLAQPIFKNRMSADFVKTHKNVGSK 86


>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 123 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 251
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 123 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 251
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical
           protein T28H11.8 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 316 FRYF*FLLMTLATVFTYSHEILLLYTVI 233
           FR+F   L T++  F YS+ ++  +T+I
Sbjct: 4   FRFFLLFLATISMTFVYSNRVVFGFTII 31


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 2   PK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHY 175
           PK +SEPF   +P +KP   PF  P+  P+   +P     K +  H+ + FP     P  
Sbjct: 10  PKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKP-KPKPMPKHKPKPFPKPMLFPKP 68

Query: 176 TP 181
            P
Sbjct: 69  MP 70


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 125 VYHEGELFPYLFNIPHYTPDK 187
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
 Frame = +2

Query: 5   KESEPFKSVVPDN----KPFGYPFD-------RPVLPQYFKQPNMFFKKV--LVYHEGEL 145
           KE+EP    +P N    K +GY  D       +P+L +Y + P  FFK+     +   ++
Sbjct: 203 KENEP---AIPPNHFEGKVYGYLVDDMSAIGIQPILDKYNEDPEKFFKRFDSKPWFRRKV 259

Query: 146 FPYLFNIPHYTP 181
            P LF   H +P
Sbjct: 260 MPLLFGKSHKSP 271


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 9   SQSHSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWST 131
           S+++ +LL   T    ++ + PFF    NN T     +W T
Sbjct: 161 SENYPTLLGNETKIEDLYYVGPFFWPKYNNFTTDQYFNWRT 201


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   PKESEPFKSVVPDNKPFGYPFDRPVLPQ 85
           PK  +  +  VP N+P    F RPV+P+
Sbjct: 129 PKTPDVIRQKVPMNEPVNCVFIRPVIPK 156


>AF039051-3|AAB94261.2|  347|Caenorhabditis elegans Hypothetical
           protein C14C6.3 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 125 VYHEGELFPYLFNIPHYTPDK 187
           VY  GEL PY + +PH+ P K
Sbjct: 314 VYRVGELNPYDYFMPHWIPLK 334


>AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical
           protein W03F8.3 protein.
          Length = 389

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 18  HSSLLFRTTNHSVIHSIAPFFLSTSNNL 101
           H  LLFR    SV+H  +P   S S+ L
Sbjct: 5   HQQLLFRLIRQSVLHQSSPTSSSASSTL 32


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 18  HSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWS-TMKENYSPIYLTFL--TIHQIK 188
           HS+  F + +   +  I PF +S ++ +  SS ++ S      Y P+   ++   +H + 
Sbjct: 175 HSAPSFASDSQQFLSPIKPFEISFNSTVDTSSNQTGSHDHSIQYQPLTHLYVPYVMHSLN 234

Query: 189 RNYNALI 209
            +Y AL+
Sbjct: 235 SSYGALL 241


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 18  HSSLLFRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWS-TMKENYSPIYLTFL--TIHQIK 188
           HS+  F + +   +  I PF +S ++ +  SS ++ S      Y P+   ++   +H + 
Sbjct: 175 HSAPSFASDSQQFLSPIKPFEISFNSTVDTSSNQTGSHDHSIQYQPLTHLYVPYVMHSLN 234

Query: 189 RNYNALI 209
            +Y AL+
Sbjct: 235 SSYGALL 241


>Z93389-6|CAB07669.2|  300|Caenorhabditis elegans Hypothetical
           protein T13F3.5 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 142 FSFMVDQDLLEEHVRLFEVLRKNGAI 65
           F F+ D+ + +  +RL +V+++NG +
Sbjct: 117 FEFLEDKSIQDNGLRLLDVMKQNGRV 142


>U64848-7|ABS83846.1|  144|Caenorhabditis elegans Hypothetical
           protein C50E3.11 protein.
          Length = 144

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +2

Query: 8   ESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEG 139
           E EP  S   D KP  Y F  P + Q    PN   KK L+  EG
Sbjct: 60  ELEPTVSHWLDRKPLMYDFQFPCILQICLVPNA--KKKLIDFEG 101


>U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical
           protein R11G1.2 protein.
          Length = 212

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   ESEPFKSVVPDNKPFGYPFDRPVLPQ-YFKQPNMFF 112
           +S+ F   VP  KP GY  D P+ P+ Y     MFF
Sbjct: 118 QSDTFGYNVP--KPIGYKGDEPIWPRSYGYSAEMFF 151


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 137 GELFPYLFNIPHYTPDK 187
           G+L PY + +PH+TP K
Sbjct: 336 GQLLPYDYFLPHWTPLK 352


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 133 MVDQDLLEEHVRLFEVLRKNGAIEW 59
           +VD+ LL+ +VR   VL+KN   EW
Sbjct: 222 VVDEVLLDTYVRQNYVLKKNVLPEW 246


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 133 MVDQDLLEEHVRLFEVLRKNGAIEW 59
           +VD+ LL+ +VR   VL+KN   EW
Sbjct: 376 VVDEVLLDTYVRQNYVLKKNVLPEW 400


>AF016445-13|AAC69055.3|  371|Caenorhabditis elegans Ligand-gated
           ion channel protein 1 protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 81  LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIK-RNYNALIRKSKRTLTITV 242
           ++T N      +R W  + ++Y P      T+H+ +  N  A I      L +T+
Sbjct: 6   MATYNKFLADQKRLWDDLFKDYDPTLSAIYTLHKSQWINQTATIHPPITELKLTM 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,699,381
Number of Sequences: 27780
Number of extensions: 126162
Number of successful extensions: 422
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)