Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m04r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    27   2.9  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   8.7  

>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = +2

Query: 527 VNRLQLHRPFNVMCNEDEPH------TPSLPLLTSIDKPETLTCSTNSLTILQKLNTTT 685
           + + QLH PF   CN  E +      TP      ++ +PE+      ++   QKL TT+
Sbjct: 3   LKKFQLHTPFAHSCNRVEIYTARFGPTPFSTKANNLKQPESTLNDHRTIAARQKLYTTS 61


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 625 RDTDLQY*QPNNITKIKYYYCKNL 696
           R T   +  PNN+T++K Y  K+L
Sbjct: 194 RQTTKYWVHPNNVTELKIYILKHL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,107
Number of Sequences: 5004
Number of extensions: 54109
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)