Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m03r
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...   153   3e-38
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    27   0.011
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.80 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   9.9  

>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score =  153 bits (371), Expect = 3e-38
 Identities = 72/155 (46%), Positives = 101/155 (65%), Gaps = 10/155 (6%)
 Frame = -3

Query: 695 SLLT*CRHNLNGKCVHCTPLEPWDEEYLKEHNIKHMSFHSYLRKI--------TSKNFVS 540
           S+ + CRH   G C +C+PLEP+DE Y +E+ IKH+SFH+YLRKI        +S++F+ 
Sbjct: 137 SMTSLCRHGPKGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNVNKYASSQSFIP 196

Query: 539 -LEELSCKIKPGCRE-HPAWPRGICSKCQPGAVTLMRQPYRHTDNVLFEHANLVERFLSY 366
            LEE S  +K  C   HP WP GIC+KCQP  V L  QP+R  D++ F    +V+ FL+ 
Sbjct: 197 PLEEPSFTVKEKCPSGHPPWPAGICTKCQPSTVMLNLQPFRVIDHIEFASPGIVDSFLNK 256

Query: 365 WRATGHQRLAWLYGQYESHPDVPLGIRARVAAIYE 261
           WR +G QR+ + YG +E + +VPLGI+  + AIYE
Sbjct: 257 WRQSGFQRIGYTYGHFEQYNNVPLGIKGVIEAIYE 291


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect(2) = 0.011
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 273 RHIRAVWTCAVCTFHN 226
           RH+   W C +CTF N
Sbjct: 93  RHVEKSWACKICTFIN 108



 Score = 26.6 bits (56), Expect(2) = 0.011
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 249 CAVCTFHNPPAAASCDMC 196
           C  CTF N P   +C++C
Sbjct: 141 CTACTFQNYPDLNTCEIC 158


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 291 YPCPRGRHIRAVWTCAVCTFHNPPAAASCDMCAMP 187
           +P  + R     W C +C F N     SC  C+ P
Sbjct: 335 FPSSKNRPRPGDWNCPMCGFSNFQRRTSCFRCSFP 369


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 671 NLNGKCVHCTPLEPWDEEY 615
           N +G    C P EPW+ EY
Sbjct: 226 NEDGNVDECAPPEPWENEY 244


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 623 EEYLKEHNIKHMSFHSYLRKI 561
           EEY+   N++H+S+  YL+ +
Sbjct: 144 EEYINLSNVQHISYLEYLKNL 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,810
Number of Sequences: 5004
Number of extensions: 56848
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)