Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m03r
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0045 + 12824766-12825417,12826608-12826753,12826825-128269... 37 0.017
01_01_0780 - 6036454-6037992 35 0.090
04_04_1125 + 31085106-31085714 34 0.12
01_01_0785 - 6076089-6077615 34 0.12
12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447... 31 0.84
09_02_0612 + 11239675-11240140,11240587-11240687 31 1.5
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 30 1.9
01_01_0779 - 6030245-6031780 30 1.9
06_01_0350 + 2534422-2535615 30 2.6
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 30 2.6
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 30 2.6
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462... 30 2.6
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 29 3.4
07_01_0135 - 989616-989702,990746-991013,991229-991566 29 3.4
06_01_0933 - 7199375-7199402,7199497-7199614,7199705-7199783,720... 29 3.4
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697 29 4.5
11_01_0492 + 3798217-3799064,3799977-3800157 29 5.9
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 29 5.9
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 5.9
01_01_0782 - 6056440-6057954 29 5.9
12_01_0226 + 1715211-1716761 28 7.8
11_01_0228 + 1768318-1769871 28 7.8
09_06_0115 + 20944586-20945185 28 7.8
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 28 7.8
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 28 7.8
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 7.8
02_03_0229 + 16617371-16617970 28 7.8
01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361... 28 7.8
>12_02_0045 +
12824766-12825417,12826608-12826753,12826825-12826935,
12827854-12828441
Length = 498
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 324 PVREPPR--RAAGYPCPRGRHIRAVWTCAVCTFHNPPAAASCDMCAMPR 184
P R P R+AG P P+ + W+CA CT NP + +CD C R
Sbjct: 42 PARAQPSSWRSAGRPPPQQQ-----WSCATCTLDNPGHSRACDACGNSR 85
Score = 35.1 bits (77), Expect = 0.068
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 312 PPRRAA-GYPCPRGRH-IRAVWTCAVCTFHNPPAAASCDMCAMPR 184
PP RA+ C GR W+CA CT NP + +C+ C R
Sbjct: 108 PPARASTSSGCGAGRPPTERKWSCAACTLDNPGHSRACEACGNSR 152
>01_01_0780 - 6036454-6037992
Length = 512
Score = 34.7 bits (76), Expect = 0.090
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 431 PYRHTDNVLFEHANLVERFLSYWRATGHQRLAWLYGQYESHPDVPLGIRARVAAIY 264
P HT ++ E NL+ FL + L W +SHPDV +RA VAA++
Sbjct: 293 PPPHTSDM--ETGNLLFDFLFAAQDASTSSLCWAVSALDSHPDVLARVRAEVAALW 346
>04_04_1125 + 31085106-31085714
Length = 202
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -1
Query: 391 TWWSASCPTGAPPATSAWPGSTASTRATPT---CRWVSVPAWP 272
TW ++CPT PP P T ATPT W PA P
Sbjct: 28 TWCGSNCPTTKPPPPPCQPPPPTPTPATPTTPPTPWTPPPATP 70
>01_01_0785 - 6076089-6077615
Length = 508
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 437 RQPYRHTDNVLFEHANLVERFLSYWRATGHQRLAWLYGQYESHPDVPLGIRARVAAIY 264
+ P HTD+ E + FL + L W +SHPDV G+RA VA+++
Sbjct: 287 KPPPAHTDDE--ELGGFLFDFLFAAQDASTSSLCWAVSALDSHPDVLAGVRAEVASLW 342
>12_02_0067 +
13144002-13144203,13144471-13144529,13144638-13144713,
13144802-13144873,13144969-13145056,13145365-13145601,
13145705-13145910,13145946-13146122,13146220-13146251,
13146330-13146432,13146547-13146815,13148029-13148175,
13148272-13148412,13148509-13148595,13148841-13148931,
13149093-13149192,13149292-13149352,13149442-13149663,
13149756-13149872,13149972-13150061,13150168-13150344
Length = 917
Score = 31.5 bits (68), Expect = 0.84
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -3
Query: 584 FHSYLRKITSKNFVSLEELSCKIKPGCREHPAWPRGICSKCQPGAVTLMRQPYRHTDNVL 405
F +Y K+ KN+ ++ E G + +P G C+ CQPG +PY N+L
Sbjct: 177 FKTYGHKV--KNWFTINEPRMMANHGYGDG-FFPPGRCTGCQPGG-NSATEPYIAAHNLL 232
Query: 404 FEHANLVERF 375
HA V +
Sbjct: 233 LSHAAAVRTY 242
>09_02_0612 + 11239675-11240140,11240587-11240687
Length = 188
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 382 SASCPTGAPPATSAWP-GSTASTRATPTCRWVSVPAWPPYTS 260
+A P APPA S+W GS + RA WVS PA PP S
Sbjct: 74 AAWAPQSAPPARSSWSRGSASMVRA-----WVSQPA-PPVRS 109
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 270 GGHAGTDTQRHVGVALVLAVEPGQALVAGGAPVGQE 377
GG AG H+G+ALV+ V A VA G G +
Sbjct: 5 GGAAGVSMAHHLGIALVVLVFAAMAQVARGGGGGHD 40
>01_01_0779 - 6030245-6031780
Length = 511
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 431 PYRHTDNVLFEHANLVERFLSYWRATGHQRLAWLYGQYESHPDVPLGIRARVAAIY 264
P HT +V E L+ FL + L W +SHP+V +RA VAA++
Sbjct: 299 PPPHTSDV--EVGALLFGFLFAAQDASTSSLCWAVSALDSHPNVLARVRAEVAALW 352
>06_01_0350 + 2534422-2535615
Length = 397
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 659 KCVHCTPLEPWDEE--YLKEHNIKHMSFHSYL 570
KC+H TP + DE+ + H+ +FH YL
Sbjct: 228 KCIHSTPRDVGDEDEAWFNPHSTDRYTFHRYL 259
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 29.9 bits (64), Expect = 2.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 267 IRAVWTCAVCTFHNPPAAASCDMCAMPR 184
+ +W C++C F N + C+MC + R
Sbjct: 56 VPVLWRCSMCMFDNHESMVYCEMCGVFR 83
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 29.9 bits (64), Expect = 2.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 267 IRAVWTCAVCTFHNPPAAASCDMCAMPR 184
+ +W C++C F N + C+MC + R
Sbjct: 56 VPVLWRCSMCMFDNHESMVYCEMCGVFR 83
>03_05_0833 -
28045442-28045881,28045961-28046063,28046172-28046203,
28046299-28046516,28046606-28046721,28047757-28048000,
28048423-28048510,28048596-28048667,28048758-28048869,
28049047-28049115,28049627-28049685,28050067-28050325
Length = 603
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 485 PRGICSKCQPGAVTLMRQPYRHTDNVLFEHANLVERFLSYWRAT 354
P C+KC G + +PY N++ HA V+R+ + ++A+
Sbjct: 261 PPNRCTKCAAGGNSAT-EPYIVAHNIILSHATAVDRYRNKFQAS 303
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 29.5 bits (63), Expect = 3.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 255 WTCAVCTFHNPPAAASCDMC 196
W C CTF NP + +C +C
Sbjct: 533 WPCERCTFINPSSVDACSVC 552
>07_01_0135 - 989616-989702,990746-991013,991229-991566
Length = 230
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 206 QEAAAGGLWKVQTAHVQTARIWR 274
Q A GLWK Q VQ RIW+
Sbjct: 53 QRTATSGLWKPQAWEVQRRRIWQ 75
>06_01_0933 -
7199375-7199402,7199497-7199614,7199705-7199783,
7200641-7200842,7200940-7200975,7201912-7202096
Length = 215
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 369 LLARHRPPAPGLALRPVREPPRRAAGYPCPRGRHIRAVWTCAVCTF 232
LL RPP P LA RP+ A G P P A W A T+
Sbjct: 16 LLLAFRPPLPALAARPI---VAAAGGKPAPTEAAATARWLAAQNTW 58
>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
Length = 375
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -2
Query: 255 WTCAVCTFHNPPAAASCDMCAMPR 184
W CA CT NP + C C R
Sbjct: 47 WACARCTLLNPSGSGVCSACEAAR 70
>11_01_0492 + 3798217-3799064,3799977-3800157
Length = 342
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 273 GHAGTDTQRHVGVALVLAVEPGQALVAGGAPVGQEALHQVGVFKQYVVSMSVRLSHQRHC 452
G++ +R+ + L++ +P A A G VG+E Q + SVRLSHQ C
Sbjct: 266 GYSLAVNERYQELMLIIRSQPRTAADASGLLVGRETCAACPA--QIDENASVRLSHQEGC 323
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 398 HANLVERFLSYW--RATGHQRLAWLYGQYESH 309
HA VE FL YW RA H WLY +Y SH
Sbjct: 135 HAGPVE-FLYYWLHRALHHH---WLYARYHSH 162
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 370 PTGAPPATSAWPGSTASTRATPTCRWVSVPAWPPY 266
P+ AP A +PG A+ P+ + PA PP+
Sbjct: 27 PSNAPAAAPIFPGGPAAGPPPPSAAYSYPPATPPF 61
>01_01_0782 - 6056440-6057954
Length = 504
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 341 LAWLYGQYESHPDVPLGIRARVAAIY 264
L W +SHPDV +RA VA+++
Sbjct: 320 LCWAVSALDSHPDVLARVRAEVASLW 345
>12_01_0226 + 1715211-1716761
Length = 516
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 422 HTDNVLFEHANLVERFLSYWRATGHQRLAWLYGQYESHPDVPLGIRARVAAIYE 261
H+D VL ++V FL R T L+W + S PDV I V A+ E
Sbjct: 295 HSDEVL---RDIVLSFLIAGRETTASGLSWFFWFLSSRPDVVARIADEVRAVRE 345
>11_01_0228 + 1768318-1769871
Length = 517
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 422 HTDNVLFEHANLVERFLSYWRATGHQRLAWLYGQYESHPDVPLGIRARVAAIYE 261
H+D VL ++V FL R T L+W + S PDV I V A+ E
Sbjct: 296 HSDEVL---RDIVLSFLIAGRETTASGLSWFFWFLSSRPDVVARIADEVRAVRE 346
>09_06_0115 + 20944586-20945185
Length = 199
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 289 IPSGTSG-WLSYWP*SQARRWWPVAR 363
+P+G G W S S+ RWWP AR
Sbjct: 161 VPAGACGLWFSMEESSREGRWWPPAR 186
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 351 PPAPGL--ALRPV-REPPRRAAGYPCPRGRHI 265
PPAP A++ V E PR G P PRGR +
Sbjct: 53 PPAPATKPAVKAVAEEDPREKKGSPLPRGRRV 84
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 315 LVLAV-EPGQALVAGGAPVGQEALHQVGVFKQYVVSMSVRLSHQRHC 452
L+ AV + G ++ GA VG ALH +K V+ +S + +R C
Sbjct: 277 LIKAVADSGAKVIVSGAAVGDMALHFCERYKLMVLRISSKFELRRFC 323
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 680 CRHNLNGKCVHCTPLEPWD-EEYL---KEHNIKHMSFHSYLRKITSKN 549
C H G VHCT ++P + EYL KE K++ ++ + K T K+
Sbjct: 1096 CLHFSMGTKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKD 1143
>02_03_0229 + 16617371-16617970
Length = 199
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 289 IPSGTSG-WLSYWP*SQARRWWPVAR 363
+P+G G W S S+ RWWP AR
Sbjct: 161 VPAGACGLWFSMEESSREGRWWPPAR 186
>01_05_0281 -
20334578-20334961,20335859-20336005,20336088-20336141,
20336391-20336555,20337331-20337855
Length = 424
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -2
Query: 390 PGGALPVLLARHRPPA---PGL-ALRPVREPPRRAAGYPCPRGRHIRAVWTCAVCTFHNP 223
P G L +A H PA P L RP+R PP R G+ G + A V + +
Sbjct: 68 PDGDLIDCVAAHLQPAFDHPRLRGQRPLRGPPERPRGWRPRPGPNDTAAGDAGVQLWASS 127
Query: 222 PAAASCDMCAMP 187
ASC ++P
Sbjct: 128 AGGASCPEGSVP 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,727,732
Number of Sequences: 37544
Number of extensions: 467252
Number of successful extensions: 1980
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1973
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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