Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11m03r
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical ... 176 2e-44
AF003386-5|AAK82898.1| 529|Caenorhabditis elegans Hypothetical ... 176 2e-44
AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical ... 176 2e-44
AF003386-1|AAK82899.1| 529|Caenorhabditis elegans Hypothetical ... 176 2e-44
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z73970-3|CAA98242.2| 773|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical ... 30 2.3
AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical ... 29 3.1
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 7.1
U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases... 28 7.1
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 9.3
U39853-1|AAK39227.2| 390|Caenorhabditis elegans Hypothetical pr... 28 9.3
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 9.3
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 9.3
AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinas... 28 9.3
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 9.3
AC098856-5|AAR12980.1| 263|Caenorhabditis elegans Hypothetical ... 28 9.3
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 28 9.3
>AF003386-6|AAK82897.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.4a protein.
Length = 527
Score = 176 bits (428), Expect = 2e-44
Identities = 76/146 (52%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Frame = -3
Query: 680 CRHNLNGKCVHCTPLEPWDEEYLKEHNIKHMSFHSYLRKITSKNFVS------LEELSCK 519
CRH + KC +C P++P+DEEYLKE +IKHMSFH+++RK+ LE C
Sbjct: 33 CRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKLLGSQGKGTTLKKPLENFRCS 92
Query: 518 IKPGCREHPAWPRGICSKCQPGAVTLMRQPYRHTDNVLFEHANLVERFLSYWRATGHQRL 339
+KP C H +P+GIC+KC+P VTL RQ +RH DN+ E+ LV +FL YWR +GHQR+
Sbjct: 93 LKPNCDAHKPFPKGICTKCKPQVVTLNRQKFRHVDNIQIENQELVNQFLDYWRLSGHQRV 152
Query: 338 AWLYGQYESHPDVPLGIRARVAAIYE 261
+L GQY+ H +VPLGI+A VAAIYE
Sbjct: 153 GFLIGQYQPHLEVPLGIKATVAAIYE 178
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 261 AVWTCAVCTFHNPPAAASCDMCAMPRSD 178
AVW C CTF N A C MC +P +D
Sbjct: 500 AVWNCGHCTFQNEAARQDCSMCGLPAAD 527
>AF003386-5|AAK82898.1| 529|Caenorhabditis elegans Hypothetical
protein F59E12.4b protein.
Length = 529
Score = 176 bits (428), Expect = 2e-44
Identities = 76/146 (52%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Frame = -3
Query: 680 CRHNLNGKCVHCTPLEPWDEEYLKEHNIKHMSFHSYLRKITSKNFVS------LEELSCK 519
CRH + KC +C P++P+DEEYLKE +IKHMSFH+++RK+ LE C
Sbjct: 33 CRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKLLGSQGKGTTLKKPLENFRCS 92
Query: 518 IKPGCREHPAWPRGICSKCQPGAVTLMRQPYRHTDNVLFEHANLVERFLSYWRATGHQRL 339
+KP C H +P+GIC+KC+P VTL RQ +RH DN+ E+ LV +FL YWR +GHQR+
Sbjct: 93 LKPNCDAHKPFPKGICTKCKPQVVTLNRQKFRHVDNIQIENQELVNQFLDYWRLSGHQRV 152
Query: 338 AWLYGQYESHPDVPLGIRARVAAIYE 261
+L GQY+ H +VPLGI+A VAAIYE
Sbjct: 153 GFLIGQYQPHLEVPLGIKATVAAIYE 178
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 261 AVWTCAVCTFHNPPAAASCDMCAMPRSD 178
AVW C CTF N A C MC +P +D
Sbjct: 502 AVWNCGHCTFQNEAARQDCSMCGLPAAD 529
>AF003386-2|AAB54255.1| 527|Caenorhabditis elegans Hypothetical
protein F59E12.5a protein.
Length = 527
Score = 176 bits (428), Expect = 2e-44
Identities = 76/146 (52%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Frame = -3
Query: 680 CRHNLNGKCVHCTPLEPWDEEYLKEHNIKHMSFHSYLRKITSKNFVS------LEELSCK 519
CRH + KC +C P++P+DEEYLKE +IKHMSFH+++RK+ LE C
Sbjct: 33 CRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKLLGSQGKGTTLKKPLENFRCS 92
Query: 518 IKPGCREHPAWPRGICSKCQPGAVTLMRQPYRHTDNVLFEHANLVERFLSYWRATGHQRL 339
+KP C H +P+GIC+KC+P VTL RQ +RH DN+ E+ LV +FL YWR +GHQR+
Sbjct: 93 LKPNCDAHKPFPKGICTKCKPQVVTLNRQKFRHVDNIQIENQELVNQFLDYWRLSGHQRV 152
Query: 338 AWLYGQYESHPDVPLGIRARVAAIYE 261
+L GQY+ H +VPLGI+A VAAIYE
Sbjct: 153 GFLIGQYQPHLEVPLGIKATVAAIYE 178
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 261 AVWTCAVCTFHNPPAAASCDMCAMPRSD 178
AVW+C CTF N C MC +P +D
Sbjct: 500 AVWSCGHCTFQNEAGRQDCSMCGLPAAD 527
>AF003386-1|AAK82899.1| 529|Caenorhabditis elegans Hypothetical
protein F59E12.5b protein.
Length = 529
Score = 176 bits (428), Expect = 2e-44
Identities = 76/146 (52%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Frame = -3
Query: 680 CRHNLNGKCVHCTPLEPWDEEYLKEHNIKHMSFHSYLRKITSKNFVS------LEELSCK 519
CRH + KC +C P++P+DEEYLKE +IKHMSFH+++RK+ LE C
Sbjct: 33 CRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKLLGSQGKGTTLKKPLENFRCS 92
Query: 518 IKPGCREHPAWPRGICSKCQPGAVTLMRQPYRHTDNVLFEHANLVERFLSYWRATGHQRL 339
+KP C H +P+GIC+KC+P VTL RQ +RH DN+ E+ LV +FL YWR +GHQR+
Sbjct: 93 LKPNCDAHKPFPKGICTKCKPQVVTLNRQKFRHVDNIQIENQELVNQFLDYWRLSGHQRV 152
Query: 338 AWLYGQYESHPDVPLGIRARVAAIYE 261
+L GQY+ H +VPLGI+A VAAIYE
Sbjct: 153 GFLIGQYQPHLEVPLGIKATVAAIYE 178
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 261 AVWTCAVCTFHNPPAAASCDMCAMPRSD 178
AVW+C CTF N C MC +P +D
Sbjct: 502 AVWSCGHCTFQNEAGRQDCSMCGLPAAD 529
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 354 RPPAPGLALRPVREPPRRAAGYPCPRGRHIRAVWT 250
RPP P RP R PP R P PR A WT
Sbjct: 35 RPPRPPSPSRPQRPPPSRPQRPPPPRQPRCEAGWT 69
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 481 RGQAGCSLQPGLILQESSSSDTKFLDVIFRKYEWNDMCL 597
R Q C Q G I+ S ++ +++ +F +YE NDM +
Sbjct: 177 RAQQNCENQCGSIVSILSPNENRYVGALFPRYESNDMII 215
>Z73970-3|CAA98242.2| 773|Caenorhabditis elegans Hypothetical
protein C29A12.3a protein.
Length = 773
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 496 CSLQPGLILQESSSSDTKFLDVIFRKYEWNDMCLMLCSFKYSSSQG 633
C L PG+ L+ + TK +D I R++ N M C +KY +G
Sbjct: 253 CKLSPGIPLKPMLAHPTKGIDEIMRRFR-NQ--TMTCEWKYDGERG 295
>AL110487-6|CAB54433.2| 472|Caenorhabditis elegans Hypothetical
protein Y39E4B.7 protein.
Length = 472
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 276 GRHIRAVWTCAVCTFHNPPAAASCDMC 196
G +R W C C F+ PP ++ C +C
Sbjct: 97 GITVRMKW-CVTCKFYRPPRSSHCSVC 122
>AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical
protein Y48C3A.12 protein.
Length = 675
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = -1
Query: 502 GNTRPGLVGSAPSASLE----Q*R*CDNLTDILTTYCLN---TPTWWSASCPTGAPPATS 344
G G SA SA + Q + +T I T C+N T T S PT + PA +
Sbjct: 575 GQASSGASASASSAHMRNLQNQIQQMKQITPITTNTCINSTSTSTTAYTSTPTASIPAAT 634
Query: 343 AWPGSTASTRATPT 302
A +TA + +PT
Sbjct: 635 AITTTTAPPKPSPT 648
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 790 ICFGPNGIARYAHRWVAWSSWHSTS*TVNSG 698
+C + R W AWS W + S T SG
Sbjct: 305 VCVSTEPVERKLGGWSAWSEWSACSETCGSG 335
>U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases,
short chain protein7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 517 ILQESSSSDTKFLDVIFRKYEWNDMCLMLCSFKYSSSQGSNGV 645
IL SSSD + FR Y + MC ML +FK + NG+
Sbjct: 184 ILCPESSSDASW----FRLYSRSKMCNMLVAFKLHRDEYHNGI 222
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 427 TDILTTYCLNTPTWWSASCPTGAPPATSAWPGSTASTRATPT 302
T TT TPT + + PT P T+ +T +T T T
Sbjct: 101 TPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTT 142
>U39853-1|AAK39227.2| 390|Caenorhabditis elegans Hypothetical
protein F13B9.6 protein.
Length = 390
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 596 KHMSFHSYLRKITSKNFVSLEELSCKIKP 510
KH+ H Y + TS NFV E C++KP
Sbjct: 243 KHVYLHMYGFQFTSNNFVHFE---CQVKP 268
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 427 TDILTTYCLNTPTWWSASCPTGAPPATSAWPGSTASTRATPTCR 296
TD TT+ ++TP+ + C + A+SA P +++ + CR
Sbjct: 212 TDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCR 255
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 427 TDILTTYCLNTPTWWSASCPTGAPPATSAWPGSTASTRATPTCR 296
TD TT+ ++TP+ + C + A+SA P +++ + CR
Sbjct: 212 TDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCR 255
>AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinase b
protein 4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 502 LQPGLILQESSSSDTKFLDVIFRKYEWN--DMCLMLC 606
L P +L+ + + + F+D + Y W D+C+ LC
Sbjct: 222 LAPLNVLELNDTKEIVFIDFEYSSYNWRGFDLCMFLC 258
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 427 TDILTTYCLNTPTWWSASCPTGAPPATSAWPGSTASTRATPTCR 296
TD TT+ ++TP+ + C + A+SA P +++ + CR
Sbjct: 212 TDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCR 255
>AC098856-5|AAR12980.1| 263|Caenorhabditis elegans Hypothetical
protein Y37F4.5 protein.
Length = 263
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 460 WHLEQIPRGQAGCSLQPGLILQESSSSDTKFLDV 561
W E +P G +L P + ES+SSD ++ +V
Sbjct: 78 WKCENMPHGFVSFNLVPFAKMYESTSSDNEYANV 111
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 427 TDILTTYCLNTPTWWSASCPTGAPPATSAWPGSTASTRATPTCR 296
TD TT+ ++TP+ + C + A+SA P +++ + CR
Sbjct: 117 TDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCR 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,236,838
Number of Sequences: 27780
Number of extensions: 357385
Number of successful extensions: 1367
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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