Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m03f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    46   6e-06
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    29   0.53 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.53 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   0.93 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   1.6  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.6  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   8.7  

>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
 Frame = +3

Query: 42  MLLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNSFA---FTLHKDRQRKEEITSSKS 212
           M+LR +S  G AR E   +D  A L  +I   +  N ++    +L ++   +  I S+ +
Sbjct: 1   MILRFRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNESDQGVIFSNLN 60

Query: 213 RQ-LRDCGLCHGDMIYLNPVNGAVLFEQSSTSSETHRKPLSESSRPVQSSEPGPSTSKVT 389
            Q L+D GL HG M+YL      +    S  +S  +   L+ +  P Q S P  S  K +
Sbjct: 61  DQTLQDAGLTHGQMLYLR-----LGTPNSDIASSNNEPALTVTGAPKQVSTPDVSEKKPS 115

Query: 390 LXXXXXXXXXXEEDEVDLQLYKVSGLIER 476
           +           +D +D  L K  GLI R
Sbjct: 116 MPVI--------QDPIDDSLEKEDGLIRR 136


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 446 LQIYFIFLWSTRRWGGYW 393
           ++I++IF+W    WGG+W
Sbjct: 99  VRIFWIFVWLEVAWGGFW 116


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +3

Query: 150 SFAFTLHKDRQRKEEITSSKSRQLRDCGLCHGDMIYLNPVNGAVLFEQSSTSSETHRKPL 329
           +F   +HK    K + +SSKS      GL     I LNP +       SS++S       
Sbjct: 313 TFVEAIHKILDTKSKHSSSKSSHDSSQGLESTSSIALNPTSSISSTSSSSSTSSAISTIS 372

Query: 330 SESSRPVQSSEPGPST 377
            + ++ V S    P+T
Sbjct: 373 QDHTKTVTSVSDEPTT 388


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 302 CGRLFKEYSTIDWIQVYHVAMTQSTISQL 216
           CGR+F+ YS++D   +    + Q  ++Q+
Sbjct: 741 CGRVFRRYSSLDCTSIVEYVIKQFKVNQM 769


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 288 EQSSTSSETHRKPLSESSRPVQSSEPGPSTSKVT 389
           E+SS +  T  +P  ++  P  ++EP  STS  T
Sbjct: 31  EESSNTPSTETQPEKKAEEPEAAAEPSESTSTPT 64


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 261 NPVNGAVLFEQSSTSSETHRKPLSESSRPVQS 356
           NP+  A L +Q    SET RK +++S + +Q+
Sbjct: 26  NPLVPAALVQQEIPVSETSRKVITDSRKEIQA 57


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 294 SSTSSETHRKPLSESSRPVQSSEPGPSTS 380
           SSTSS T     S SSRP  SS    S S
Sbjct: 376 SSTSSSTLTSSSSSSSRPASSSSHSSSLS 404


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 239 TQSTISQLSRFAGCDFFLALSVLVQSECERVQIQSF 132
           + S IS  SR     F+ A+S  V S C  +Q+QSF
Sbjct: 425 SDSLISWASRLFTKGFWYAISFGVFSNCFSLQLQSF 460


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 129 YEALNLNSFAFTLHKDRQRKEEITSSKSRQLRDCGL-CHGDMIYLNPV 269
           Y  +  + F FT  KD   K+EIT    + LR   L  H D   + P+
Sbjct: 598 YYPIESSEFGFTNLKDVTSKDEITDGFDKALRSNSLRTHRDSRPVQPL 645


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 105 TAHLFERIYEALNLNSFAFTLHKDRQRKEEITSSKSRQLRDCGL 236
           + HL  ++ +   + +FA     D    + IT      LR+CGL
Sbjct: 116 SVHLHTKLIDGRPITNFASFNFLDLAENKHITECAVATLRECGL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,856
Number of Sequences: 5004
Number of extensions: 56209
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)