Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m03f
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417...    29   3.9  
01_05_0406 + 21875376-21875451,21875570-21875610,21876245-218763...    29   3.9  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    28   6.8  
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328...    28   6.8  
01_06_0573 + 30345935-30346429,30346523-30346690                       28   6.8  
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    27   8.9  

>02_01_0567 -
           4168164-4168250,4168672-4168828,4168951-4169090,
           4170318-4170456,4170562-4170830,4170914-4171000,
           4171259-4171327,4171427-4171455,4171544-4171950,
           4172906-4172977,4173150-4173221,4173299-4173370,
           4173454-4173519,4173717-4173785,4173866-4173995,
           4174846-4174975
          Length = 664

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 261 NPVNGAVLFEQSSTSSETHRKPLSESSRPVQSSEPGPSTS 380
           NP N ++    S +S+ T   P    S P  S  P PS+S
Sbjct: 208 NPFNTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPSSS 247


>01_05_0406 +
           21875376-21875451,21875570-21875610,21876245-21876314,
           21876410-21876558,21876671-21876766,21876863-21876933,
           21877119-21877267,21877400-21877463,21877547-21877631,
           21878079-21878139,21879005-21879144,21879266-21879559
          Length = 431

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 303 SSETHRKPLSESSRPVQSSEPGPSTSK 383
           SS + R+P+  SSR +QSSE  PS S+
Sbjct: 344 SSGSLRRPVVSSSRELQSSEAEPSRSR 370


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 SSTSSETHRKPLSESSRPVQSSEPGPSTSKVT 389
           SST  + H + L ESS P  + +P  +  K+T
Sbjct: 604 SSTGGDNHPEGLRESSSPSLNKDPNAAVKKLT 635


>02_05_0785 -
           31730300-31730701,31730785-31730856,31730940-31732864,
           31733000-31733150,31733944-31734009,31734247-31734645
          Length = 1004

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 202 DVISSLRCLSLCRVNAKEFRFR 137
           DVI SLRCL     N KE RF+
Sbjct: 553 DVIKSLRCLYEISKNLKEIRFK 574


>01_06_0573 + 30345935-30346429,30346523-30346690
          Length = 220

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 71  YSASGGAGLRCDGASIRANIRSSESELFRIHSAQGQTAQGRNHIQQIETAA 223
           +S++ G GL C  A+  A + ++ +E+ R+HSA       R +   +  AA
Sbjct: 103 FSSAAGCGLSC--ATAAARLLAAAAEVSRLHSATDAAQWLRRNYGDVRDAA 151


>04_03_0199 -
           12559351-12559433,12559693-12559827,12560260-12560437,
           12560848-12561389,12561398-12564827
          Length = 1455

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 68  RYSASGGAGLRCDGASIRANIRSSESELFRIHSAQGQTAQGRNHIQQI 211
           RY + G +   CDG  I      SE+E  R+  +    A   +HI  I
Sbjct: 676 RYDSGGSSENECDGNMISEPSMHSETEGERLQMSDSNGAPSLDHILDI 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,235
Number of Sequences: 37544
Number of extensions: 382277
Number of successful extensions: 1159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)