Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m03f
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical ...    31   0.86 
AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical ...    31   0.86 
Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z50858-4|CAA90724.2|  156|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical...    27   8.1  

>AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1a protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 72  TARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRKEEITSSKSRQLR 224
           T  V+VLD  +T      +++ +N+N F     KDR+ +      K+  LR
Sbjct: 79  TLEVQVLDGSITEMWMNEVFKEMNINGFLKLSWKDRRLRWNPEEWKTEVLR 129


>AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1b protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 72  TARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRKEEITSSKSRQLR 224
           T  V+VLD  +T      +++ +N+N F     KDR+ +      K+  LR
Sbjct: 79  TLEVQVLDGSITEMWMNEVFKEMNINGFLKLSWKDRRLRWNPEEWKTEVLR 129


>Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical
           protein K01D12.5 protein.
          Length = 270

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 310 RPTGNPSVKV-PDQFSHQSQVLPRLKSHYQYPPHL 411
           RP   P ++  P   +   QVLP  +++YQYP +L
Sbjct: 53  RPYNQPQLQQKPSVLTQSYQVLPESRNYYQYPQYL 87


>Z50858-4|CAA90724.2|  156|Caenorhabditis elegans Hypothetical
           protein F44A6.4 protein.
          Length = 156

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 24  MSRSQKMLLRVQS--PEGTARVEVLDSDVTAHLFERIYEALNLNSFAFTLHKDRQRKEEI 197
           M  + K ++R+Q    +G  +    +  VTAHL+   Y  L    FA     ++QRKE  
Sbjct: 42  MLTTLKFVIRLQQGHAQGNLKPNCFNDTVTAHLYTFPYNILTNCIFACEDFINKQRKESA 101

Query: 198 TSSKSRQ 218
            + K  Q
Sbjct: 102 ENLKRSQ 108


>Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical
           protein F32D8.12b protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 292 SLPQAQRPTGNPSVKVPDQFSHQSQVLPRLKSHYQYPPHLLVLQ 423
           SLP  Q+  GN SV+  +    Q     R +SH+  PP  +VL+
Sbjct: 17  SLPDLQKIVGNSSVRTQESVRRQ---FARDESHFIAPPPAVVLE 57


>Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical
           protein F32D8.12a protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 292 SLPQAQRPTGNPSVKVPDQFSHQSQVLPRLKSHYQYPPHLLVLQ 423
           SLP  Q+  GN SV+  +    Q     R +SH+  PP  +VL+
Sbjct: 17  SLPDLQKIVGNSSVRTQESVRRQ---FARDESHFIAPPPAVVLE 57


>Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +2

Query: 191 RNHIQQIETAARLWTVSWRHDILESSQWCCTL*TVFHKLRDPPETPQ*KFQTSSVIRARS 370
           +N + ++++A  L T+S  HD+L           ++ K++ PP+    KFQ++S     +
Sbjct: 238 QNGVFRLQSAQDLTTLSKNHDLLT---------ILYFKIKTPPQ----KFQSASNFSKLA 284

Query: 371 FHV*SHITNTPPTSWC 418
           +H      NT  T +C
Sbjct: 285 YHYLDGDPNTDRTIFC 300


>Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +2

Query: 191 RNHIQQIETAARLWTVSWRHDILESSQWCCTL*TVFHKLRDPPETPQ*KFQTSSVIRARS 370
           +N + ++++A  L T+S  HD+L           ++ K++ PP+    KFQ++S     +
Sbjct: 238 QNGVFRLQSAQDLTTLSKNHDLLT---------ILYFKIKTPPQ----KFQSASNFSKLA 284

Query: 371 FHV*SHITNTPPTSWC 418
           +H      NT  T +C
Sbjct: 285 YHYLDGDPNTDRTIFC 300


>U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical
           protein T20D4.3 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 542 NQGISNFYQLEIFIKKQFFIPLSFN*TRNFVQLQIYFIFL-WST 414
           N G +   +    I K   IP+  N T +  QLQ++FI L WST
Sbjct: 556 NSGTTQIGENLNLISKSTRIPIEQNLTIDNPQLQVFFIMLHWST 599


>Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK632.3 protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 159 FTLHKDRQRKEEITSSKSRQLRDCGLCHGDM----IYLNPVNGAVLFEQSSTSSETHRKP 326
           FT  + R   +++ S   R  ++C L H D+    + L P N   + + S     +H + 
Sbjct: 359 FTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVSQAMDLSHPRS 418

Query: 327 LSESSRPVQS 356
           L   +R +Q+
Sbjct: 419 LQFLTRDIQN 428


>AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical
           protein Y48A6B.10 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 301 QAQRPTGNPSVKVPDQFSHQSQVLPRLKSHYQYPPHLLVLQRKMK*ICNCT 453
           Q   P G     VP ++  QS+  PR +   Q PP  ++LQ   +   N T
Sbjct: 273 QCLTPNGRLLPAVPRKYPSQSEPPPRSRPAPQKPPITIMLQSNSRLTANNT 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,676
Number of Sequences: 27780
Number of extensions: 322484
Number of successful extensions: 1085
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)