Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m03f
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.44 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 294  SSTSSETHRKPLSE 335
            SS SSE HR+PLSE
Sbjct: 1319 SSGSSEDHRRPLSE 1332


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 21  KMSRSQKMLLRVQSPEGTARVEVLDSDVTAHLFERIYEALNLNS 152
           KM ++ K L  V +PE T  +  + ++  + + ER      +NS
Sbjct: 301 KMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNS 344


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 265 QSMVLYSLNSLPQAQRPTGNPSVKVPDQFSHQSQVLPRLKSHYQ 396
           Q M LY L     AQ P     V    +    +   PR K H++
Sbjct: 404 QEMALYYLKPSYDAQEPAWKTHVWKKGRDKKSTSKKPRRKFHFK 447


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 290 TVFHKLRDPPETP 328
           T+ HK+R PP TP
Sbjct: 458 TLKHKIRVPPGTP 470


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 35  TKNAIASSVTRRYSASGGAGLRCDGASIRANIRSSES 145
           T+NA  S      + S     R  G+SI  N   SES
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSES 43


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 35  TKNAIASSVTRRYSASGGAGLRCDGASIRANIRSSES 145
           T+NA  S      + S     R  G+SI  N   SES
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSES 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,309
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)