Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02r
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   4.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.0  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +1

Query: 436 CNLNEHVCNSNS---WPIIIN 489
           CN N H C S S   W I++N
Sbjct: 341 CNGNAHNCPSRSHPVWEIVMN 361


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +1

Query: 436 CNLNEHVCNSNS---WPIIIN 489
           CN N H C S S   W I++N
Sbjct: 348 CNGNAHNCPSRSHPVWEIVMN 368


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 342 PFAFFYLCQNDATIEPTRGTNLSHDTA*RVTGSDQIKFSGLQLFN 208
           PFA  ++    ATI+P     +S+D    +     I  +GL+  N
Sbjct: 201 PFACTHVIYAFATIDPHNFNMISNDDESDIIQGGYISVTGLKRVN 245


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 87  TRDFSPKIQRLIQRKREVELQLRCEMRCDATLPASCLLV 203
           TR+   ++++   ++  V    RCE+     LP S + V
Sbjct: 79  TREQLARLEKEFFKENYVSRPRRCELAAQLNLPESTIKV 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,149
Number of Sequences: 336
Number of extensions: 3064
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)