Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    29   0.94 
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   6.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.7  

>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 23  LHELVTIIRNFPKLVCAHSTKYKRLFPKNTTTYSKKER 136
           LH+ V + R F     +H  KYK+LF +N  T  KK R
Sbjct: 74  LHK-VLVQRQFGFEEKSHGLKYKKLFRRNIGTSEKKNR 110


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 454 HAHSNCKFELSFIDILNRLMIKKKN*LYKVNVRTRSKT 341
           H     + + S IDILN L+ K++  L K     +SKT
Sbjct: 466 HEEHPAQIKKSEIDILNNLIEKEEGELTKYQTLVKSKT 503


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 377 IV*GQCAHAFENPLHFFIC 321
           I+  QC   F N +HFF C
Sbjct: 308 IILEQCPEMFANDIHFFYC 326


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 173  CYASSVVFTCCTLNSCNPLNLIWSLPVTRHAVSCDKF 283
            C + S+VF   T    N LNL+  LP   H +  ++F
Sbjct: 4005 CISRSIVFNKQTSFKNNLLNLLELLPTMTHTLPHNRF 4041


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,203
Number of Sequences: 5004
Number of extensions: 53966
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)