Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02f
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 255 RDNNELIDNLMRGKYIRSAEV-ENVFRALDRADYMSSEVRDQAY 383
           RD  +L  N  +  +I    + ENV RA D+A Y       Q Y
Sbjct: 546 RDGRQLPINRKQKVFINGTLIIENVERASDQATYDCVAKNSQGY 589


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 267 HYYHALNSLHLPFLMILFY 211
           +YY+A   +HL + +++ Y
Sbjct: 115 YYYYAFFGVHLAYGVVIIY 133



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 479 FPERRLWDRLLEHL 520
           F +RR W RLL++L
Sbjct: 88  FYKRRTWTRLLKNL 101


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 414 HMSAPCIYSEVMEALELKTGLTFLNVGSGTG 506
           H+S P    E  E L  K G+T   V +  G
Sbjct: 252 HLSNPYPSEEAKEELARKCGITVSQVSNWFG 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,439
Number of Sequences: 336
Number of extensions: 2827
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)