Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    41   1e-04
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   3.4  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   3.4  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   4.4  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   7.7  

>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
 Frame = +3

Query: 261 NNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGSLHMSAPCIYS 440
           N  L+ +L+  K++ +        A  R+ Y        + + + +    + +SAP +++
Sbjct: 10  NAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGY---GVTISAPHMHA 66

Query: 441 EVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
             ++ LE  L+ G + L++GSG+GYL   +  ++  +G   GIE
Sbjct: 67  TALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTVKGIE 110


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 526 PTKVFK*PVPEPTFRKVKPVFSSRAS 449
           P+  FK P  EP F  V+PV S  +S
Sbjct: 269 PSIAFKLPTMEPNFNDVRPVTSISSS 294


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 270 LIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKD 389
           +  N   GK+ R A    + RA D  DY S+ + D +  D
Sbjct: 190 IYSNYRNGKFYREARSAAIGRAEDNFDYYSTGMADLSKDD 229


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 392 KVLIRLIPYF*RHVIGTIECP 330
           K+L+ +IPYF   V+ + ECP
Sbjct: 48  KLLLTVIPYFREVVLMSFECP 68


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 330 GIRSPLPRNGCICLSSGCQSTHYYHALNSLHLPFLM 223
           G +S +P+ G  CL   C+S  +  + NSL + FL+
Sbjct: 46  GAQSDIPKVGK-CLFLPCRSLEFRASANSLSVHFLL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,841
Number of Sequences: 5004
Number of extensions: 46243
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)