Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02f
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517...    48   5e-06
05_07_0351 + 29468247-29469851                                         29   2.6  
07_03_0379 - 17452525-17452695,17452990-17453325,17453419-174536...    28   4.5  

>04_04_0268 -
           24050721-24050971,24051112-24051276,24051479-24051749,
           24052344-24052517
          Length = 286

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
 Frame = +3

Query: 261 NNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMSAPCIY 437
           N  L++ L +   +R+ +V  V  ++DRA +++  +    Y D     G +  +SAP ++
Sbjct: 69  NKALVEYLKQYGAVRTDKVAEVMESIDRALFVAEGLTP--YTDSPMPIGYNATISAPHMH 126

Query: 438 SEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
           +  +E L+  L+ G+  L+VGSG+GYL     +++G  G   GIE
Sbjct: 127 ATCLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIE 171


>05_07_0351 + 29468247-29469851
          Length = 534

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
 Frame = +3

Query: 291 GKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRN-GSLHMSAPCIYSEVMEALELK 467
           GK   +  + N +R    + +       +A  DL +    S   +  C Y +VM+   + 
Sbjct: 174 GKSKVTKVIMNWYRPAKSSSWRRFRCSQRACMDLPYNTCESPDQNTSCTYYQVMKDSTIT 233

Query: 468 TGL---TFLNVGSGTGYLNTLVGLIIGTSGINHG 560
           +G+       V    G +  L GL+IG S   HG
Sbjct: 234 SGIYGQEKATVAVSDGTMKKLPGLVIGCSTFEHG 267


>07_03_0379 -
           17452525-17452695,17452990-17453325,17453419-17453691,
           17453784-17453858,17453951-17454105,17454198-17454314,
           17454394-17454684,17454811-17454859
          Length = 488

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 340 IVPITCLQKYGIRRIRTLPGG 402
           IVP TCLQK   R   T+ GG
Sbjct: 12  IVPYTCLQKQAARTAATMSGG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,476
Number of Sequences: 37544
Number of extensions: 322497
Number of successful extensions: 905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)