Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02f
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    81   5e-16
U15129-1|AAB60240.1|  225|Caenorhabditis elegans protein-L-isoas...    60   8e-10
U09669-1|AAA82166.1|  225|Caenorhabditis elegans protein-L-isoas...    60   8e-10
AF022968-2|AAB69887.1|  225|Caenorhabditis elegans Protein carbo...    60   8e-10
AF022968-1|ABR92613.1|  219|Caenorhabditis elegans Protein carbo...    51   5e-07
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    31   0.58 

>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 8/115 (6%)
 Frame = +3

Query: 246 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMS-SEVRDQAYKDLA-------WR 401
           +S   N++LID L++   IR   +E  FR +DR+D++  SE +      L        + 
Sbjct: 3   NSESQNDDLIDFLVKNDTIRRRNIERAFRLVDRSDFLPISERKFTRLPSLTSTEPGGPFY 62

Query: 402 NGSLHMSAPCIYSEVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
            G+L + A  IY+++ + L+L+ G +FL++G+G+GYL+T+ G+++G +GINHGIE
Sbjct: 63  PGALRVGAIDIYAKLFDYLDLRKGHSFLHIGTGSGYLSTIAGILLGETGINHGIE 117


>U15129-1|AAB60240.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
 Frame = +3

Query: 246 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 422
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATVS 60

Query: 423 APCIYSEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
           AP +++  ++ L+  L  G   L+VGSG+GYL   + +++G +G   GIE
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIE 110


>U09669-1|AAA82166.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
 Frame = +3

Query: 246 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 422
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATVS 60

Query: 423 APCIYSEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
           AP +++  ++ L+  L  G   L+VGSG+GYL   + +++G +G   GIE
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIE 110


>AF022968-2|AAB69887.1|  225|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1, isoform a protein.
          Length = 225

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
 Frame = +3

Query: 246 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 422
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATVS 60

Query: 423 APCIYSEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
           AP +++  ++ L+  L  G   L+VGSG+GYL   + +++G +G   GIE
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIE 110


>AF022968-1|ABR92613.1|  219|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1, isoform b protein.
          Length = 219

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 34/107 (31%), Positives = 53/107 (49%)
 Frame = +3

Query: 246 SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGSLHMSA 425
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G     A
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPR----APYEDAPQRIGYNATHA 60

Query: 426 PCIYSEVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 566
             +  + ++   L  G   L+VGSG+GYL   + +++G +G   GIE
Sbjct: 61  AAL--DYLQN-HLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIE 104


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 372 PVLLKTCNRHDRVPGIRSPLPRNGCICLSSGCQSTHYYHALNSLHLPF 229
           PV L T NRH  V  ++S +P N  + L  G +   Y    ++  LPF
Sbjct: 13  PVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRY--NTDAADLPF 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,851,865
Number of Sequences: 27780
Number of extensions: 268518
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)