Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11m02f
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.70 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.70 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 247 LTAPPIFNDSFLPPPLRRTSLAPQLILDVTSLV 149
           L +PP F+ S  PP + ++ +  + I + T ++
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 247 LTAPPIFNDSFLPPPLRRTSLAPQLILDVTSLV 149
           L +PP F+ S  PP + ++ +  + I + T ++
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 273 IDNLMRGKYIRSAEVENV 326
           IDNL + KY+R+   E++
Sbjct: 372 IDNLRKAKYLRACITESL 389


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 459 ELKTGLTFLNVGSGTGYLNTLVGLIIGT 542
           + + G+T   V S  GY+N+ V  +I T
Sbjct: 651 DCQPGVTAFIVTSWLGYMNSFVNPVIYT 678


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 349 ITCLQKYGIRRIRTLP 396
           I CLQ    + I+TLP
Sbjct: 2   IQCLQSSAFKEIKTLP 17


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 349 ITCLQKYGIRRIRTLP 396
           I CLQ    + I+TLP
Sbjct: 55  IQCLQSSAFKEIKTLP 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,986
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)