Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l24f
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    30   0.19 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    30   0.19 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.45 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.8  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   3.2  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   4.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   5.5  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.3  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   7.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   7.3  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   9.6  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.6  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 294 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 199
           ++ G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +2

Query: 254 AVSGDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 412
           A S  FK DI E + ++      A  HL+ R  E ++ KLP+E E F  K++P
Sbjct: 106 AYSVVFKDDISEEMLKS------ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 125 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGDFKKDIPEAVAE 301
           F   + +  Y ++ND       + +ID S+K+F  C  E +   +  GD  +D   A  +
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 302 ACGKCTPAQKHLFKRFLEVVK 364
              +      HL ++F +V++
Sbjct: 86  VQNEYHQKSNHLREKFAQVLE 106


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +2

Query: 116  FALFAAVYCKETYS--SENDDLDIEALVGNIDSLKAFIGCFL-----ETSPCDAVSGDFK 274
            F+ FA     ET S  SE     +  +  N D   + +  FL      T  C  V    K
Sbjct: 1244 FSEFAKRVNTETLSLISEWCASSLSLIKANYDEFSSTVDDFLFRFSKATEQCLMVKY-IK 1302

Query: 275  KDIPEAVAEACGKCTPAQK-HLFKRFLEVVKDKLPQEYEAFKTKY 406
            KD+   + E+C      ++ HL+K+F +V+   L    E   T++
Sbjct: 1303 KDLEIEIEESCDFSIQTEEIHLYKKFKDVISSNLEFIVEIKNTRW 1347


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 125 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 235
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  KMKGFYVLCFALFAAVYCKETYS 157
           ++ G ++LC  L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 350  LEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAVLNL 499
            LE +KD +P      ++K +  GK FD  L  V  + GN   ++  VLNL
Sbjct: 2628 LEYIKDSVP------RSKRNT-GKMFDDSLELVPENLGNDLKVYFEVLNL 2670


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/80 (22%), Positives = 32/80 (40%)
 Frame = +2

Query: 8   FSFPFWFKSSACAEYRIIFRINWRL*FKMKGFYVLCFALFAAVYCKETYSSENDDLDIEA 187
           F FP +   S    +    + +WR      GF ++C  +   + CK     +   L+I  
Sbjct: 24  FYFPVYDSDSPTTVHHDERKESWR----SHGF-IVCLHIRCCICCKYNSKIKKPSLNIAL 78

Query: 188 LVGNIDSLKAFIGCFLETSP 247
            + ++  +K  I  F  T P
Sbjct: 79  RIQSLKIIKILIFQFYSTKP 98


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 KHPLATLFPGISKRTFLKLWQKHVANVLQPRNIYSNVSLKSS--RTSYLKNTK 389
           KHP      G+S RT L ++ K+ AN  + ++ +   S+ SS   +S  KN+K
Sbjct: 513 KHPSLAKHSGVSLRTGLLIYPKY-ANGSKRKDGFGATSIISSGEHSSLPKNSK 564


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 251 DAVSGDFKKDIPEAVAEACG 310
           +++S D   D  E+VAEACG
Sbjct: 103 NSISSDVPFDYSESVAEACG 122


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 249 ATLFPGISKRTFLKLWQKHVANVLQPRNIYSNVSLKSS 362
           A L PGIS      LW   + N+L+   + + V++  S
Sbjct: 452 ACLRPGISDAMLSLLWDSVIVNILEKCALKNEVTIFES 489


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 161 ENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSGDF 271
           E+DDLD +  V ++D L +    FL+      +SG+F
Sbjct: 523 EDDDLDADICVKDVDRLYSIHAFFLKMKD---ISGEF 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,384
Number of Sequences: 5004
Number of extensions: 48474
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)