Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l24f
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0068 + 488943-490457                                             29   2.4  
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888...    28   4.2  
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    28   5.6  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    27   7.4  
06_03_0620 - 22803769-22804867,22804959-22805311                       27   9.8  

>02_01_0068 + 488943-490457
          Length = 504

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 219 LLDAS*KHPLATLFPGISKRTFLKLWQKHVA 311
           +L A    P+ + FP I+KR F   W  HVA
Sbjct: 214 MLRAFTSFPVFSFFPAITKRLFRNQWAAHVA 244


>04_02_0031 +
           8874025-8874180,8882152-8882550,8882651-8882987,
           8883234-8884060
          Length = 572

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = -2

Query: 267 SPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSAKHST*KPFIL 88
           SPE   Q +    H I     ++F  +A   R + S+   + +    N +   + +PFI+
Sbjct: 137 SPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEVNPSLPPSFEPFIM 196

Query: 87  NYSLQLIRKIILYSAHAELLNQNGNEKK 4
           N++++ + + ++   H  L     + KK
Sbjct: 197 NFNMKNLNRTLI-ELHGMLKTAEESIKK 223


>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 282 FLKLWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKPSKLNT 407
           +++ W+K V  VL   ++Y N +     T+++K      LNT
Sbjct: 336 YVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNT 377


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 24/68 (35%), Positives = 32/68 (47%)
 Frame = -2

Query: 312 LPHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*T 133
           L  A A A  MS    P+T   G +S   P+     S  PT +S S SS S L VS    
Sbjct: 13  LSDAFAAAVLMSSTDKPDTLPPGRLSPVSPLTHSSSSKLPTPSSSSGSSGS-LSVSRAPA 71

Query: 132 AANSAKHS 109
           +A +++ S
Sbjct: 72  SALASRRS 79


>06_03_0620 - 22803769-22804867,22804959-22805311
          Length = 483

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 137 YCKETYSSENDDLDIEAL-VGNIDSLKAFIGCFLETS 244
           + KE  +S  D L I+ + VGN   LKA+ G F++T+
Sbjct: 103 WVKENVTSYGDKLKIKYVAVGNEPFLKAYNGSFMKTT 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,190
Number of Sequences: 37544
Number of extensions: 289452
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)