Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l24f
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)             30   1.4  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            28   4.3  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   28   5.7  
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)                   28   5.7  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
          Length = 641

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 383 YEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAV---LNLLADMNNLY 523
           +    T  DP   HFDA+ + +    G+  L F AV   LN L D + LY
Sbjct: 332 FTGLNTLLDPSMLHFDAVFTGLNTLLGSSMLYFGAVFTGLNTLLDPSMLY 381


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 288 SGMSFLKSP---ETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSL 142
           +G+ ++KS     T +Q D+  K+P +  R  ++PT++    S    + VSL
Sbjct: 346 AGLVYMKSGFMNRTVTQADLYNKYPDRPVRLKVYPTQSPAISSDVGGVNVSL 397


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 248 CDAVSGDFKKDIPEAVAEACGKC 316
           CDAV+G   K +P    E C KC
Sbjct: 642 CDAVTGKCYKCLPNVTGEHCEKC 664


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +2

Query: 263 GDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKT 400
           G F + +   +A ACGKC   ++ + +     ++   P +Y+  K+
Sbjct: 546 GSFPRFLNTFIAHACGKCHNHRETVIEYITSNIQSHQPSQYDVRKS 591


>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
          Length = 514

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/53 (20%), Positives = 28/53 (52%)
 Frame = +3

Query: 285 LKLWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKPSKLNTIPKESISMLCYP 443
           ++ W++   +  + ++I+ +  L  +  ++   T+    +T+P E IS L +P
Sbjct: 189 IRHWKRTAGDEYKDKDIWCDGGLHETSLAHRPRTRQRLKSTVPNELISTLLFP 241


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 362 KDKLPQEYEAFKTKYD 409
           KD  PQ+Y+A+K+KYD
Sbjct: 531 KDITPQDYQAWKSKYD 546


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 243  PLATLFPGISKRTFLK---LWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKPSKLNTIP 413
            P  T+ P  +K T L    +    V +V+ P + Y NVS+K SRT Y K+T+ S    I 
Sbjct: 4548 PTVTVDPDTAKVTILDDDAILTFVVPSVVVPED-YGNVSVKVSRTGY-KDTEHSFTVIIK 4605

Query: 414  KES 422
             ES
Sbjct: 4606 PES 4608


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143  KETYSSENDDLDIEA-LVGNIDSLKAFIGCFLETSPCD 253
            ++T S E+ D  + A ++ N D LK     FLE+SP D
Sbjct: 2393 EKTSSGEDSDAPLLANIISNPDLLKVLKNTFLESSPRD 2430


>SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 251 DAVSGDFKKDIPEAVAEACGKCTP 322
           DAV  D  K IP+AV +   K TP
Sbjct: 184 DAVCNDTSKSIPDAVCDDTSKSTP 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,669
Number of Sequences: 59808
Number of extensions: 345117
Number of successful extensions: 868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)