Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l24f
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83319-3|CAB05905.1|   74|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF043697-6|AAB97554.1|  161|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   8.8  

>Z83319-3|CAB05905.1|   74|Caenorhabditis elegans Hypothetical
           protein T02D1.7 protein.
          Length = 74

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 92  MKGFYVLCFALFAAVYCKETYSSENDDLDIEALVGNIDSLKAFIG 226
           M+  ++L  ++ + ++     +  +D  DIEAL+G  D + AF+G
Sbjct: 1   MQFLHILLLSILSLIFISSVQAVPSDQ-DIEALMGLQDQVNAFLG 44


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 275 KDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVA 451
           K + + + E   K    +K +  +   + K  L +  E +K KYD   +H+D + S+VA
Sbjct: 141 KKVRQNLLERQRKLQVNKKQVDDKIQALEKAALKKNDELYKEKYDEITRHYDRIRSSVA 199


>AF043697-6|AAB97554.1|  161|Caenorhabditis elegans Hypothetical
           protein F56C11.3 protein.
          Length = 161

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 DSLKAFIGCFLETSPCDAVSGDFKKDIPEA 292
           D  ++F+    +T PCD  + D +KD+ E+
Sbjct: 82  DRARSFMSILGKTYPCDFCAKDLRKDLKES 111


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
            complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +2

Query: 326  QKHLFKRFLEVVKDKLPQEYEAFKTKYDP 412
            +KH+F+ + ++++D +   Y   +T ++P
Sbjct: 956  EKHIFETWEDIIQDAIASSYAQRRTSFEP 984


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,465
Number of Sequences: 27780
Number of extensions: 262995
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)