Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l23f
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   0.76 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.1  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.4  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 53  MPKYYCDYCDTYLTHDSPSVRKTH 124
           +PK Y DYC    T +S SVR +H
Sbjct: 663 LPKVYEDYCP---TSNSGSVRMSH 683


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 260  KGTAIPPP 283
            KGTA+PPP
Sbjct: 1107 KGTAVPPP 1114


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 41  CFLKMPKYYCD 73
           CF+K+P++Y D
Sbjct: 140 CFVKVPRHYDD 150


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  KCLNITVIIVILTSHMIHLV 110
           KCL ITV I+ + ++++  V
Sbjct: 61  KCLEITVKILKIVAYLVTFV 80


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  KCLNITVIIVILTSHMIHLV 110
           KCL ITV I+ + ++++  V
Sbjct: 61  KCLEITVKILKIVAYLVTFV 80


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  KCLNITVIIVILTSHMIHLV 110
           KCL ITV I+ + ++++  V
Sbjct: 61  KCLEITVKILKIVAYLVTFV 80


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  KCLNITVIIVILTSHMIHLV 110
           KCL ITV I+ + ++++  V
Sbjct: 61  KCLEITVKILKIVAYLVTFV 80


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 388 TTNDDGSTWANAAND 432
           T NDD   W+NA  D
Sbjct: 259 THNDDERFWSNATVD 273


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 197 DVVLVPPSISDNKTSHC 147
           DV+ V P +SD++ + C
Sbjct: 289 DVIKVEPELSDSEKTLC 305


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,020
Number of Sequences: 336
Number of extensions: 2398
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)