Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l23f
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    68   8e-13
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    39   4e-04
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   0.45 
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   1.4  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   4.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.6  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   5.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.6  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    25   7.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   9.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   9.7  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.7  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +2

Query: 53  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID--ATTAAFK 226
           MP+Y CDYC  +LTHDS SVRK H  GR H  NV+ YY K  +E+AQ  ++  A++   K
Sbjct: 1   MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60

Query: 227 AG 232
            G
Sbjct: 61  KG 62


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 53  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 157
           +PKYYC YC  ++  D+P  R++H    KH+D +K
Sbjct: 8   IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 77  CDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQK--WMEEQAQH 196
           CD  L H+ P + K++ T R H  + + ++Q+   +  Q QH
Sbjct: 89  CDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQH 130


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 301 HYRRIPRWWYCSAFVAKWILSNF 233
           +Y+  P+WWY + F+  + L+ F
Sbjct: 527 NYKEAPQWWYATLFIVVFGLTIF 549


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 95  HDSPSVRKTHCTGRKHKDNV-KFYYQKWMEEQAQHL 199
           HDSPS+RK    G    D   K  Y   + ++A+HL
Sbjct: 467 HDSPSIRKLIDIGEIDFDQAFKICYDSNLLDEAKHL 502


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 370 SWRSYGTTNDDGSTWANAANDGNETAYDGPH 462
           S+  +   NDD   WA AA D  E  +  P+
Sbjct: 101 SFEYFNLGNDDQGMWAAAAMDAAEANFSPPN 131


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 313 TPTSCTRWSSRYDTSSIYGSWR-SYGTTN 396
           T ++C +WSS+   S I   WR SY   N
Sbjct: 121 TTSTCMKWSSKTTKSEIEVEWRDSYLDAN 149


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 166 SEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCT 330
           ++ +  TS T      S   +  N   S++ +   +TTT G FGN T + P++ T
Sbjct: 544 TQTNNATSNTGTGLFGSNNANTTNTGGSLFNKP--STTTGGLFGNTTAQQPSTTT 596


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 140 HKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPP 283
           HKD  + Y + W  +  + L        KA KIA  P      A+ PP
Sbjct: 15  HKDWQR-YVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPP 61


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 152 VKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPPWDPSV 298
           VKF+  +   E+ +HLI   +  +KA      PFG+    +P   D SV
Sbjct: 436 VKFWNYEKSTEEPEHLITTDSPVWKA---RFTPFGDGVILMPQRGDNSV 481


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 220 IQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRY--DTSSIYGSWRSYGTT 393
           ++ R+N +  +  Q+H + + L  +G+GT +      + + +   D + +  S +S G +
Sbjct: 304 LEFRKNKASRMTTQKHIDQSILDRYGDGTSKVKDKKAKNNEKEVPDLAILDKSEKSKGES 363

Query: 394 NDD 402
           N D
Sbjct: 364 NTD 366


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 98  DSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLI 202
           +S  +R+     R H ++V  YY  W+E +A   +
Sbjct: 596 NSRILREVMTLSRLHHEHVVRYYTAWVETEANDTV 630


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 271 NTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGS--WRSYGTTNDDGSTWANAANDG 435
           N TT  S  + T           SR+DTSS  G   W+ Y   N  G ++ N+ ++G
Sbjct: 189 NMTTGDSSASFTELAQAVFNEIMSRWDTSSCGGGVRWQIYSFNN--GYSYKNSISNG 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,026
Number of Sequences: 5004
Number of extensions: 36675
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)