Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l23f
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 89 2e-18
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 38 0.005
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 37 0.009
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 33 0.20
06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146... 31 0.80
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 31 0.80
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 30 1.4
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 30 1.4
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 1.8
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 1.8
09_02_0448 - 9458463-9459752 29 2.4
07_03_1605 - 28093235-28094031,28094887-28094974 29 2.4
03_03_0262 + 15968884-15969687 29 2.4
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 3.2
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 28 4.3
08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867... 28 5.6
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 27 7.5
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 27 7.5
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 27 7.5
02_01_0023 + 146841-147002,147962-148036,148181-148234,148284-14... 27 7.5
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725... 27 9.9
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 205
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 47 LKMPKYYCDYCDTYLTHDSPSVRKTHCTGRKH 142
+ + KYYCDYC+ D+P+ RK H G +H
Sbjct: 449 MPLGKYYCDYCEKQF-QDTPAARKRHLDGAQH 479
>06_01_0784 -
5868545-5868888,5868990-5869085,5870313-5870394,
5870639-5870839,5871810-5871818
Length = 243
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2
Query: 65 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 154
+CD+C Y+ ++ S+R TH G++HKDNV
Sbjct: 12 WCDFCKIYIANNPLSIR-THEIGKRHKDNV 40
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 157
M ++YC +CD Y S SV++ H ++HK +K
Sbjct: 61 MGQFYCLHCDRYFA--SESVKEEHYRSKRHKKRIK 93
>06_01_0187 +
1458802-1458895,1459004-1459464,1459551-1459648,
1460918-1461487,1461534-1461822,1461904-1462086,
1462204-1462824
Length = 771
Score = 30.7 bits (66), Expect = 0.80
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 298 YRRIPRWWYCSAFVAKWILSNFAC 227
Y+++P WW+ S +A ++ F C
Sbjct: 444 YKQVPEWWFISILIASVAITMFTC 467
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 200 IDATTAAFKAGKIAQNPFGNKGTAIPPPWDP 292
+DAT A G IA P G +G PPP P
Sbjct: 524 VDATVVAAAGGGIAIGPLGEEGLVGPPPPPP 554
>09_06_0194 -
21469815-21470117,21470226-21470376,21470463-21470700,
21470784-21470991,21471107-21471309,21471407-21471508,
21471622-21472945
Length = 842
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +1
Query: 217 GIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSR-YDTSSIYGSWRSYGTT 393
G + C+ + + C TRR PT C W D + SW G T
Sbjct: 374 GNMNAGECAAACRRNCSCVAYAYADLSRSTRRDPTRCLMWGGELLDMEKVNESWGDLGET 433
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +2
Query: 29 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 202
+GC K+ +Y CD L D P VRKT C + + N + + E + LI
Sbjct: 200 MGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLI 259
Query: 203 DATTAAFKAGKIA 241
A +A
Sbjct: 260 SDNNPMVVANAVA 272
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 68 CDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 157
C+ C + D+P V + H TG+KHK N++
Sbjct: 280 CEVCK--IQCDTPEVLRIHKTGKKHKKNLE 307
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 29.5 bits (63), Expect = 1.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 298 YRRIPRWWYCSAFVAKWILSNFAC 227
Y+++P WW+ +A ++ FAC
Sbjct: 437 YKQVPEWWFVCILIANIAVTIFAC 460
>09_02_0448 - 9458463-9459752
Length = 429
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1
Query: 191 VLVPPSISDNKTSHCLYVFF 132
V++PP I D K SHCL VFF
Sbjct: 146 VVIPP-IPDKKYSHCLAVFF 164
>07_03_1605 - 28093235-28094031,28094887-28094974
Length = 294
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 295 GNGTRRT---PTSCTR-WSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAYDGP 459
GNGTR T P+SCT+ WS + +++ G GTT S + N +E+ D P
Sbjct: 87 GNGTRHTVFGPSSCTQSWSHQAAAAAMGGK----GTTGSRSSISLCSDNYDSESEVDDP 141
>03_03_0262 + 15968884-15969687
Length = 267
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 259 VAKWILSNFACFECRCCCIDEML 191
V W+ SN C CRC IDE L
Sbjct: 119 VDMWLRSNSTCPLCRCAVIDEAL 141
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 175 DGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTR 333
+ G HR + I+ S S W +RHCN T L ++ G C+R
Sbjct: 175 EAGALVPIHRLKSLRIRRSTPPSSSSWWRRHCNRTPL-TWPLGVYIVSVQCSR 226
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 286 GSFGNGTRRTPTSCTRWSSRYDTSSIYGS------WRSYGTTNDDGSTWANAANDGNETA 447
G G G P +C+ +R+ S++ S W + T DGS+W++ +G T+
Sbjct: 310 GQQGYGGGVPPPTCSGGHTRFGASALLISNACSLNWYLWNHTMSDGSSWSSDGTEGQYTS 369
>08_02_0189 +
13984892-13984943,13985929-13986480,13986577-13986759,
13986826-13987006,13987238-13987654,13987742-13988128,
13988176-13988467
Length = 687
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 107 SVRKTHCTGRKHKDNVKFYYQKWMEE----QAQHL 199
S HC H N K+YY+ W+EE QA H+
Sbjct: 448 STTPLHCLA--HSLNPKYYYETWLEEAPNRQAPHM 480
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 256 QQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWR 378
Q RHC TT + +G T C S RY + + +R
Sbjct: 602 QCRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVPEYR 642
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 27.5 bits (58), Expect = 7.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 298 YRRIPRWWYCSAFVAKWILSNFAC 227
Y+++P WW+ +A + FAC
Sbjct: 440 YKQVPEWWFICILIANIGTTIFAC 463
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 334 WSSRYDTSSIYGSWRSYGTTNDD 402
+ SRYD + YG R YG +DD
Sbjct: 185 YGSRYDNRNGYGGEREYGYRDDD 207
>02_01_0023 +
146841-147002,147962-148036,148181-148234,148284-148388,
148736-148836,148937-148992,149284-149324,149427-149527,
149629-149724,149905-149969,150048-150119,150537-150772,
150874-150904,151020-151165,151264-151365,151469-151513,
151614-151780,151812-152214
Length = 685
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 425 AALAHVDPSSLVVP*DLQDP 366
A LAHV+P++ +VP DL P
Sbjct: 641 ARLAHVEPAAAIVPQDLTPP 660
>02_05_1253 +
35270040-35270044,35270213-35270297,35270809-35272590,
35272710-35273237
Length = 799
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -2
Query: 253 KWILSNFACFECRCCCIDEMLCLFL---HPFLIIKLHIVFMFSSCAVSF 116
+W+L F F C + +L F HPF+++ L F + VSF
Sbjct: 126 RWVLVQFGAFIV-LCGLTHLLTAFTYEPHPFMVVLLLTTAKFLTALVSF 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,253
Number of Sequences: 37544
Number of extensions: 249591
Number of successful extensions: 829
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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