Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l23f
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   5e-23
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      32   0.36 
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)                  31   0.47 
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 31   0.82 
SB_33483| Best HMM Match : TSP_1 (HMM E-Value=0)                       31   0.82 
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              30   1.4  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    29   2.5  
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)                   28   4.4  
SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)                      28   4.4  
SB_52750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_20541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.8  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   27   7.6  
SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   27   7.6  

>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 84.6 bits (200), Expect(2) = 5e-23
 Identities = 39/60 (65%), Positives = 45/60 (75%)
 Frame = +2

Query: 104 PSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPP 283
           PSVRKTH  GRKHK+NV+FYYQKWMEEQAQ LID TTAAF++   +Q P       +PPP
Sbjct: 160 PSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQTTAAFQSKPNSQMPPNAPPGLMPPP 219



 Score = 40.7 bits (91), Expect(2) = 5e-23
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +2

Query: 59  KYYCDYCDTYLTHDSPSV 112
           +YYCDYCDT+LTHDS S+
Sbjct: 111 RYYCDYCDTFLTHDSNSL 128


>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 178 GGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCN 273
           GG S   H+ +N  ++S  + + S+W++RHC+
Sbjct: 633 GGASFEYHKPDNHALESDPDPNLSVWKRRHCS 664


>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
          Length = 502

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 56  PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 154
           P+Y+C+ CD+   H   +++  H  G KH+ NV
Sbjct: 278 PRYHCELCDSKFDH---NLKFPHLVGAKHRFNV 307


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 50  KMPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 157
           KM +YYC  CD  ++ +S    + H T  +H+D +K
Sbjct: 778 KMGQYYCQDCD--ISMNSIKQMEQHMTSARHRDGLK 811


>SB_33483| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 372

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 178 GGTSTTSHRCNNSGIQ-SRQNCSKSIWQQRHCNTTTLGSFGNGTRRTP-TSCT 330
           GGT      C N   Q   +NC+ S  Q R CNT      GN ++ +  TSCT
Sbjct: 197 GGTQVRLRSCTNPEPQYGGKNCTGSYKQIRECNTQPCPVDGNYSQWSEWTSCT 249


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 304 TRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNET 444
           T   PT+ T  ++ Y+TS  Y +   Y T ND  ++   + ND   T
Sbjct: 56  TTTAPTTTTTPNNDYNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNT 102


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 205 IDEMLCLFLHPFLIIKLHIVFMFSSCAVSFPYTR*IMCEVS 83
           + E +CL L  F I  LH V   +S  +S P    I C+VS
Sbjct: 153 VAEQMCLVLECFKIGSLHFVLHETSKEISLPDRVAIFCDVS 193


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 86   YLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQ 187
            YL  DS  V + + T  K   +VKF+Y+K +E++
Sbjct: 2150 YLHTDSSKVLQMNATVAKRSMDVKFFYEKGIEQK 2183


>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1540

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 83  TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 181
           TY    +  +RK  CTG  H D +  YYQ+  E
Sbjct: 522 TYSDRSTSQLRK--CTGLYHSDRIVHYYQRTRE 552


>SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)
          Length = 123

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 181
           TY    +  +RK  CTG  H D++  YYQ+  E
Sbjct: 31  TYSDRSTRQLRK--CTGLYHSDHIVHYYQRTRE 61


>SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)
          Length = 339

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 181
           TY    +  +RK  CTG  H D++  YYQ+  E
Sbjct: 31  TYSDRSTRQLRK--CTGLYHSDHIVHYYQRTRE 61


>SB_52750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 193 TSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSC 327
           T H C    + +    +K ++  +  +T+ +G+  NG +RT   C
Sbjct: 40  TRHTCGVRNMNNGNKRTKVLYNTQTRHTSGVGNMNNGNKRTKVLC 84


>SB_20541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 83  TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 181
           TY    +  +RK  CTG  H D +  YYQ+  E
Sbjct: 31  TYSDRSTRQLRK--CTGLYHSDRIVHYYQRTRE 61


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 286 GSFGNGTRR---TPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNET 444
           G+ GNGT     T  S T  S    T+S  G+  S GTT+  G+T +   + G  T
Sbjct: 510 GATGNGTSSNGGTTGSSTTSSGESGTTSTGGNTGS-GTTSSGGNTGSGTTSSGGNT 564


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +1

Query: 187 STTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIY 366
           +T S  C N+   +R N S +       NT+T  S       +  +C    S   TSS  
Sbjct: 199 NTISSTCANTCANTRSNTSANTRANTCSNTSTYTSTNTRANTSSNTCADTRSNTSTSSYT 258

Query: 367 GS 372
           G+
Sbjct: 259 GT 260


>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1726

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 63  ITVIIVILTSHMIHLV*GKLTAQEENIKTM*SFIIRNGWRNKHNI-SSMQQQRHSKQAKL 239
           I +I+V++   M+ L+   + A +E  K          +R++HNI SS Q     KQ  L
Sbjct: 6   IVIILVMMVFEMLMLLTMMMVALDETKKE---------FRDQHNIFSSKQSTSEQKQDAL 56

Query: 240 LKIHLATKALQYHHLGILR 296
           + ++     L YH+ G+ +
Sbjct: 57  MDLN-RLSTLLYHYTGLAK 74


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +1

Query: 181 GTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRY---D 351
           GTSTT+    +SG +     +      R  +TTT  ++ +G R TPT+ T +SS Y    
Sbjct: 91  GTSTTT--AYSSGYRGTPTTTAYSSGYRETSTTT--AYSSGYRGTPTT-TAYSSGYRGTS 145

Query: 352 TSSIYGSWRSYGTT 393
           T++    +R   TT
Sbjct: 146 TTTYSSGYRGTSTT 159


>SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 175 DGGTSTTSHRCNNSGIQSRQNCSKSIWQQRH-CNTTTLGSFGNGTRRTPTSCTRWSSRYD 351
           +GG S      N  G + +   + +     +   TT   S GNGT  TPT+ +  SS   
Sbjct: 133 NGGGSEGQTTPNGGGSEGQTTATPTTSSSGNGSGTTASSSSGNGTHATPTTGSSNSSTTP 192

Query: 352 TSS 360
           +SS
Sbjct: 193 SSS 195


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 119 FSLH*VNHV*GKYHNNHSNI*AFSKSISNLENTSFKKK 6
           FS    N + G YH N+ NI   SK +     +SF+ K
Sbjct: 23  FSFERFNGIMGNYHKNNHNI-GCSKCLKEFATSSFESK 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,616,981
Number of Sequences: 59808
Number of extensions: 294459
Number of successful extensions: 1093
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)