Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l23f
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 137 2e-32
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 137 2e-32
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 137 2e-32
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 137 2e-32
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 134 3e-31
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 132 6e-31
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 75 2e-13
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 46 1e-04
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 39 0.010
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 39 0.010
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 39 0.010
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 39 0.010
CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein. 33 0.50
CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein. 33 0.50
BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin typ... 33 0.50
AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein pr... 33 0.50
Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type ... 32 1.2
Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type ... 32 1.2
BC086873-1|AAH86873.1| 267|Homo sapiens SLC16A12 protein protein. 31 2.0
AL353146-5|CAI12383.2| 486|Homo sapiens solute carrier family 1... 31 2.0
AL353146-4|CAI12382.1| 138|Homo sapiens solute carrier family 1... 31 2.0
AK127303-1|BAC86925.1| 486|Homo sapiens protein ( Homo sapiens ... 31 2.0
AK124901-1|BAC85987.1| 354|Homo sapiens protein ( Homo sapiens ... 31 2.0
AY040219-1|AAK76739.1| 1382|Homo sapiens ATP-binding cassette tr... 30 4.6
AF411579-1|AAL99902.1| 1344|Homo sapiens ATP-binding cassette pr... 30 4.6
AF367202-1|AAK58869.1| 1382|Homo sapiens ATP-binding cassette pr... 30 4.6
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 137 bits (332), Expect = 2e-32
Identities = 61/80 (76%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 232
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 233 KIAQNPFG---NKGTAIPPP 283
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 137 bits (332), Expect = 2e-32
Identities = 61/80 (76%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 232
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 233 KIAQNPFG---NKGTAIPPP 283
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 137 bits (332), Expect = 2e-32
Identities = 61/80 (76%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 232
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 233 KIAQNPFG---NKGTAIPPP 283
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 137 bits (332), Expect = 2e-32
Identities = 61/80 (76%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 232
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 233 KIAQNPFG---NKGTAIPPP 283
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 134 bits (323), Expect = 3e-31
Identities = 59/80 (73%), Positives = 64/80 (80%), Gaps = 3/80 (3%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 232
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKH++N K YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 233 KIAQNPFG---NKGTAIPPP 283
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 132 bits (320), Expect = 6e-31
Identities = 62/90 (68%), Positives = 68/90 (75%), Gaps = 6/90 (6%)
Frame = +2
Query: 32 GC*CFLKMP---KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLI 202
GC FL + ++YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWMEEQAQ LI
Sbjct: 12 GCRLFLFLSPLFRFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLI 71
Query: 203 DATTAAFKAGKIAQNPFG---NKGTAIPPP 283
D TTAAF+ GKI PF G IPPP
Sbjct: 72 DKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 101
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 74.5 bits (175), Expect = 2e-13
Identities = 36/53 (67%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Frame = +2
Query: 134 RKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 283
RKHK+NVK YYQKWMEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 4 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 45.6 bits (103), Expect = 1e-04
Identities = 24/39 (61%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 176 MEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 283
MEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 1 MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 39
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.010
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 56 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 235
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.010
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 56 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 235
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.010
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 56 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 235
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.010
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 56 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 235
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein.
Length = 170
Score = 33.5 bits (73), Expect = 0.50
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 59 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 190
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein.
Length = 170
Score = 33.5 bits (73), Expect = 0.50
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 59 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 190
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin type 5
protein.
Length = 170
Score = 33.5 bits (73), Expect = 0.50
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 59 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 190
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein
protein.
Length = 170
Score = 33.5 bits (73), Expect = 0.50
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 59 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQA 190
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 32.3 bits (70), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 65 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEE 184
+C C L +S + +H G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 32.3 bits (70), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 65 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEE 184
+C C L +S + +H G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>BC086873-1|AAH86873.1| 267|Homo sapiens SLC16A12 protein protein.
Length = 267
Score = 31.5 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 220 CRCCCID-EMLCLFLHPFLIIKLHIVFMFSSCAVSFPY 110
C CCC+ E L + F+++ + ++FM C+ F Y
Sbjct: 17 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 54
>AL353146-5|CAI12383.2| 486|Homo sapiens solute carrier family 16,
member 12 (monocarboxylic acid transporter 12) protein.
Length = 486
Score = 31.5 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 220 CRCCCID-EMLCLFLHPFLIIKLHIVFMFSSCAVSFPY 110
C CCC+ E L + F+++ + ++FM C+ F Y
Sbjct: 236 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 273
>AL353146-4|CAI12382.1| 138|Homo sapiens solute carrier family 16,
member 12 (monocarboxylic acid transporter 12) protein.
Length = 138
Score = 31.5 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 220 CRCCCID-EMLCLFLHPFLIIKLHIVFMFSSCAVSFPY 110
C CCC+ E L + F+++ + ++FM C+ F Y
Sbjct: 32 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 69
>AK127303-1|BAC86925.1| 486|Homo sapiens protein ( Homo sapiens
cDNA FLJ45370 fis, clone BRHIP3017558, weakly similar
to Monocarboxylate transporter 3. ).
Length = 486
Score = 31.5 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 220 CRCCCID-EMLCLFLHPFLIIKLHIVFMFSSCAVSFPY 110
C CCC+ E L + F+++ + ++FM C+ F Y
Sbjct: 236 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 273
>AK124901-1|BAC85987.1| 354|Homo sapiens protein ( Homo sapiens
cDNA FLJ42911 fis, clone BRHIP3024118, weakly similar
to Monocarboxylate transporter 4. ).
Length = 354
Score = 31.5 bits (68), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 220 CRCCCID-EMLCLFLHPFLIIKLHIVFMFSSCAVSFPY 110
C CCC+ E L + F+++ + ++FM C+ F Y
Sbjct: 104 CLCCCLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVY 141
>AY040219-1|AAK76739.1| 1382|Homo sapiens ATP-binding cassette
transporter sub-family C member 11 protein.
Length = 1382
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = -2
Query: 229 CFECRCCCIDEMLCLFLHPFLIIKLHIVFMFSSCAVSFPYTR*IMCEVSITIITVIFRHF 50
CF +D++L +F FL++ L ++ + +V PY +M + + I + + F
Sbjct: 922 CFAGDLEQLDQLLPIFSEQFLVLSLMVIAVLLIVSVLSPYIL-LMGAIIMVICFIYYMMF 980
Query: 49 QKALAT*KIL 20
+KA+ K L
Sbjct: 981 KKAIGVFKRL 990
>AF411579-1|AAL99902.1| 1344|Homo sapiens ATP-binding cassette protein
C11 isoform A protein.
Length = 1344
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = -2
Query: 229 CFECRCCCIDEMLCLFLHPFLIIKLHIVFMFSSCAVSFPYTR*IMCEVSITIITVIFRHF 50
CF +D++L +F FL++ L ++ + +V PY +M + + I + + F
Sbjct: 922 CFAGDLEQLDQLLPIFSEQFLVLSLMVIAVLLIVSVLSPYIL-LMGAIIMVICFIYYMMF 980
Query: 49 QKALAT*KIL 20
+KA+ K L
Sbjct: 981 KKAIGVFKRL 990
>AF367202-1|AAK58869.1| 1382|Homo sapiens ATP-binding cassette protein
C11 protein.
Length = 1382
Score = 30.3 bits (65), Expect = 4.6
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = -2
Query: 229 CFECRCCCIDEMLCLFLHPFLIIKLHIVFMFSSCAVSFPYTR*IMCEVSITIITVIFRHF 50
CF +D++L +F FL++ L ++ + +V PY +M + + I + + F
Sbjct: 922 CFAGDLEQLDQLLPIFSEQFLVLSLMVIAVLLIVSVLSPYIL-LMGAIIMVICFIYYMMF 980
Query: 49 QKALAT*KIL 20
+KA+ K L
Sbjct: 981 KKAIGVFKRL 990
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,230,176
Number of Sequences: 237096
Number of extensions: 1339523
Number of successful extensions: 7461
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7450
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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