Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l23f
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 30 0.95
AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 30 1.3
AB071420-1|BAB86940.1| 401|Caenorhabditis elegans 2-amino-3-car... 30 1.3
Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC024842-6|AAY86285.1| 215|Caenorhabditis elegans Hypothetical ... 28 3.9
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical ... 28 5.1
Z82093-5|CAB05016.3| 192|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 6.7
Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical pr... 27 8.9
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.9
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 27 8.9
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 27 8.9
AC006775-2|AAF60621.2| 557|Caenorhabditis elegans Hypothetical ... 27 8.9
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical
protein F08B4.7 protein.
Length = 142
Score = 113 bits (271), Expect = 1e-25
Identities = 50/78 (64%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Frame = +2
Query: 53 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 232
MPKYYCDYCDT+LTHDSPSVRKTH GRKHKDNV+ +YQKWME+QAQ L+D T AF
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60
Query: 233 KI-AQNPFGNKGTAIPPP 283
++ P G A PP
Sbjct: 61 RMQGAVPRTTMGMAPVPP 78
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 127 HRKKT*RQCEVLLSEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQ 261
HR +T C L S DGG + R +N+ +S N +S+ Q
Sbjct: 13 HRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRSSSNAKESVLMQ 57
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 127 HRKKT*RQCEVLLSEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQ 261
HR +T C L S DGG + R +N+ +S N +S+ Q
Sbjct: 13 HRTQTTSVCNHLFSPGDGGPTFAPQRDSNTSSRSSSNAKESVLMQ 57
>AC006816-2|AAK85508.1| 352|Caenorhabditis elegans Hypothetical
protein Y71D11A.3a protein.
Length = 352
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 547 LLLFVHRWSIHKWRSHL-SHWSHW 479
++LFVH W +H W L +W W
Sbjct: 180 VVLFVHPWDMHMWDGRLDKYWMPW 203
>AC006816-1|AAN39661.1| 401|Caenorhabditis elegans Hypothetical
protein Y71D11A.3b protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 547 LLLFVHRWSIHKWRSHL-SHWSHW 479
++LFVH W +H W L +W W
Sbjct: 229 VVLFVHPWDMHMWDGRLDKYWMPW 252
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +1
Query: 253 WQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAAND 432
W +R +GN +WSS+Y + Y S YG + TW N+ +
Sbjct: 18 WFRRQYGWAGSPYYGNAQYYETQPQQQWSSQYQNNQNYYSPYFYGYQHQ--QTWQNSNQN 75
Query: 433 GNETAYDGP 459
+T Y+ P
Sbjct: 76 QYQTLYNRP 84
>AB071420-1|BAB86940.1| 401|Caenorhabditis elegans
2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 547 LLLFVHRWSIHKWRSHL-SHWSHW 479
++LFVH W +H W L +W W
Sbjct: 229 VVLFVHPWDMHMWDGRLDKYWMPW 252
>Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical
protein T04C12.2a protein.
Length = 334
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 253 KWILSNFACFECRCCCIDEMLCLFLHPF 170
KW+L N C+ CC +D ++C + P+
Sbjct: 64 KWVLLNTHCW---CCYVDILICSLITPY 88
>AC024842-6|AAY86285.1| 215|Caenorhabditis elegans Hypothetical
protein Y59H11AR.5 protein.
Length = 215
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/80 (25%), Positives = 29/80 (36%)
Frame = +1
Query: 214 SGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTT 393
SG+Q+++ S Q + GS G +RT S+Y + W +
Sbjct: 107 SGVQNQREISYVTQQALGTMSQGSGSIWIGAKRTTLCKASRLSKYCNTLTSFQWTDGSAS 166
Query: 394 NDDGSTWANAANDGNETAYD 453
DG W N D N D
Sbjct: 167 GLDGLIWNNNQPDNNYNRTD 186
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 340 SRYDTSSIYGSWRSYGTTNDDGSTWANAAN-DGNETAYDG 456
S + ++ YG+ S+GT ++DG++W + N +GN + G
Sbjct: 241 SNNNNNNNYGN--SWGTNDNDGNSWKGSGNSNGNSDNWGG 278
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 340 SRYDTSSIYGSWRSYGTTNDDGSTWANAAN-DGNETAYDG 456
S + ++ YG+ S+GT ++DG++W + N +GN + G
Sbjct: 241 SNNNNNNNYGN--SWGTNDNDGNSWKGSGNSNGNSDNWGG 278
>AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical
protein C44B12.5 protein.
Length = 397
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 98 DSPSVRKTHCTGRKHK-DNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAI 274
DS H GR HK D+ W ++ + A ++ AQNP N A
Sbjct: 239 DSDEKDGKHGRGRFHKVDSTYLSEANWEPKKYHKNVKCVCCAPRSSPAAQNPSYNNNAAQ 298
Query: 275 PPP 283
PP
Sbjct: 299 SPP 301
>Z82093-5|CAB05016.3| 192|Caenorhabditis elegans Hypothetical
protein ZK39.6 protein.
Length = 192
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +1
Query: 286 GSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNE 441
GSF G R T T+ + T + SW T DG W D ++
Sbjct: 86 GSFWIGAHRITTCMTQIITAQCTPTNSFSWTDNSATRTDGFVWETQQPDNSD 137
>Z74029-2|CAA98432.1| 334|Caenorhabditis elegans Hypothetical
protein C45B11.4 protein.
Length = 334
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 253 KWILSNFACFECRCCCIDEMLCLFLHPF 170
KW++ N C+ CC +D ++C + P+
Sbjct: 64 KWVIFNTHCW---CCYVDILVCSLITPY 88
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 289 SFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGST 411
S G+ TP S S+ D S++ GS S G+TN+ GST
Sbjct: 747 SASTGSTNTPGSTE--STITDGSTVSGSTGSTGSTNNPGST 785
>Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical
protein F59B2.12 protein.
Length = 918
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +1
Query: 166 SEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSR 345
++M G TSH N + S + H N +L + GN +++ + +S
Sbjct: 221 AQMSIGADGTSHNITNR--KGSVGDSHNAASDAHSNFESLDAQGN--KKSQNYSKKAASA 276
Query: 346 YDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAYD 453
+++ + S N DG++ +N+ + N T+YD
Sbjct: 277 SGSNADFES-NLESLKNADGTSMSNSTGNFNNTSYD 311
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 205 CNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGT 306
CN+ + SR+NC+ WQ+ T L +G T
Sbjct: 1031 CNDPTVSSRENCTGVFWQKLF--VTRLEVYGKDT 1062
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 205 CNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGT 306
CN+ + SR+NC+ WQ+ T L +G T
Sbjct: 1065 CNDPTVSSRENCTGVFWQKLF--VTRLEVYGKDT 1096
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 205 CNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGT 306
CN+ + SR+NC+ WQ+ T L +G T
Sbjct: 1123 CNDPTVSSRENCTGVFWQKLF--VTRLEVYGKDT 1154
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 205 CNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGT 306
CN+ + SR+NC+ WQ+ T L +G T
Sbjct: 1176 CNDPTVSSRENCTGVFWQKLF--VTRLEVYGKDT 1207
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 205 CNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGT 306
CN+ + SR+NC+ WQ+ T L +G T
Sbjct: 1095 CNDPTVSSRENCTGVFWQKLF--VTRLEVYGKDT 1126
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +2
Query: 29 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 202
+GC K+ +Y CD + + P VRKT C + H N ++ E L+
Sbjct: 110 MGCIRVEKITEYLCDPLRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLL 169
Query: 203 DATTAAFKAGKIA 241
A +A
Sbjct: 170 SDANPMVVANAVA 182
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +2
Query: 29 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 202
+GC K+ +Y CD + + P VRKT C + H N ++ E L+
Sbjct: 110 MGCIRVEKITEYLCDPLRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLL 169
Query: 203 DATTAAFKAGKIA 241
A +A
Sbjct: 170 SDANPMVVANAVA 182
>AC006775-2|AAF60621.2| 557|Caenorhabditis elegans Hypothetical
protein Y46H3B.1 protein.
Length = 557
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 286 GSFGNGTRRTPTSCTRW----SSRYDTSSIYGSWRSYGTTNDDG 405
G F G +R PT+ + W YD+S Y +WRS + DG
Sbjct: 485 GMFWFGLKRDPTNSSNWYFINGDTYDSS--YQNWRSGYPRDADG 526
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,644
Number of Sequences: 27780
Number of extensions: 218611
Number of successful extensions: 843
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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