Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l23f
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.2  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 110 VRKTHCTGRKHKDNVK 157
           +R THC      DN++
Sbjct: 409 IRNTHCVNNNQNDNIQ 424


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 205 CNNSGIQSRQNCSKSIWQQRHCNT 276
           CN S   S  +C   I  QRH +T
Sbjct: 374 CNISPRSSADSCQVGIMAQRHRDT 397


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 298 NGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETA 447
           NG+ R+P S +R S + +   I  S+ S  T N   +T     +  ++T+
Sbjct: 320 NGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKCSQTS 369


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 179 EEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPP 283
           E  +  L +++T +         P+  +GT + PP
Sbjct: 871 EVSSDKLQESSTDSRNPALALAEPYNQRGTVVSPP 905


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +2

Query: 179  EEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPP 283
            E  +  L +++T +         P+  +GT + PP
Sbjct: 909  EVSSDKLQESSTDSRNPALALAEPYNQRGTVVSPP 943


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,672
Number of Sequences: 438
Number of extensions: 2488
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)