Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l22r
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 262 5e-71
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 93 3e-20
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 64 3e-11
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 36 0.005
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 32 0.079
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.74
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.2
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 2.2
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 3.0
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 27 3.9
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 25 9.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.1
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 262 bits (641), Expect = 5e-71
Identities = 127/239 (53%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Frame = -1
Query: 760 LGDVYCIAQSYRAEQFRTRRHLAEYSHVEAECPFITFXXXXXXXXXXXXXXXXXXXXSPE 581
LG VY I +S+RAE+ TRRHL+E++HVE E PF+ F P
Sbjct: 330 LGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGEFLEIIEEFICQTIDRLLDDPI 389
Query: 580 GQ-LVYELXXXXXXXXXXXKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTD 404
L+ +L R++Y +AI+YL +NI +G ++FG+DI E ERKMTD
Sbjct: 390 ATPLIKQLNPDFVKPSRPFMRLSYEDAIKYLNEHNILTPEGEQHKFGDDIAEAAERKMTD 449
Query: 403 AIGVPILLCKFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGY 224
I PI L FP EIKS YM R VD LTESVD LMP VGEIVGGSMRI D +EL+ Y
Sbjct: 450 QINRPIFLTYFPLEIKSFYMKRVVDRPELTESVDCLMPNVGEIVGGSMRISDIQELLAAY 509
Query: 223 KREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 47
KREGIDP+PYYW+T+QRK+G+ HGG GLGLERFL WL DRY +R+ CL+PRF ERCTP
Sbjct: 510 KREGIDPAPYYWFTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFPRFTERCTP 568
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 93.5 bits (222), Expect = 3e-20
Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 2/233 (0%)
Frame = -1
Query: 760 LGDVYCIAQSYRAEQFRTRRHLAEYSHVEAECPFITFXXXXXXXXXXXXXXXXXXXXSPE 581
L VY I+ ++RAEQ T RHLAE+ +EAE F+T
Sbjct: 218 LSRVYTISPAFRAEQSHTSRHLAEFWMLEAEVAFMTSLSQLTSLMEDMIKYTLNSLMEQN 277
Query: 580 GQLVYELXXXXXXXXXXXKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDA 401
Y MTY EAIE L A T + ++G D+ E+ + +
Sbjct: 278 ----YHRDHWDQLLKPWKC-MTYSEAIEELSAVKKTWKYPP--KWGNDLSSEHEKYLCEI 330
Query: 400 IG-VPILLCKFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGY 224
+ P+ + +P +IK YM D +VD+L+P VGE+ GGS+R DH ++ Y
Sbjct: 331 LHKTPVFVTDYPQKIKPFYMKSSGPDT--VAAVDLLVPQVGELAGGSLRK-DH---LDEY 384
Query: 223 KREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLL-DRYHIRDVCLYPR 68
K P WY D K+ + PHGG+GLG+ER + +L + ++++ +PR
Sbjct: 385 KTY---PPELQWYLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFPR 434
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 63.7 bits (148), Expect = 3e-11
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = -1
Query: 376 KFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSP 197
K+P+ ++ Y +D R + S D M G EI+ G+ RI D E L+E K G+ P
Sbjct: 471 KYPSSVRPFYTMPDPEDPRYSNSYDFFMKGQ-EIMSGAQRIHDPELLVERMKALGVSPDV 529
Query: 196 -YYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 47
Y D G PH G G+GLER + + L+ +IR +PR +R P
Sbjct: 530 GLQQYIDAFAIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDPKRLLP 580
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 772 VSGDLGDVYCIAQSYRAEQFRTRRHLAEYSHVEAECPF 659
++ D V+ I +RAE T RH+ E++ ++ E F
Sbjct: 316 IAADRERVFEIGPVFRAEDSNTYRHMTEFTGLDLEMAF 353
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -1
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R + +L D IR+V L+P
Sbjct: 542 EYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFP 575
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 32.3 bits (70), Expect = 0.079
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = -1
Query: 304 DVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKF------GSVPHGGY 143
D+++ G+ E+ GGS+RI H ++ + + + P Y G PHGG
Sbjct: 495 DIVVNGI-ELGGGSIRI--HNPDIQRFVLKDVLKLPENRYATFEHLIRVLSSGCPPHGGI 551
Query: 142 GLGLERFLCWLLDRYHIRDVCLYPR 68
LG +R L + IR+V +P+
Sbjct: 552 ALGFDRLAALLTNAPGIREVIAFPK 576
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 373 TCTAVSARQWRPSSSALAFPGCPLQTRRRI 462
TC + R W S FP CP + RR+
Sbjct: 1152 TCKMIEKRLWPTMSPLRQFPNCPSEVIRRV 1181
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 169 FGSVPHGGYGLGLERFLCWLLD 104
FG+ P Y + F+CWL D
Sbjct: 201 FGTSPFNAYQQNTDNFVCWLFD 222
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 313 ESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTD--QRKFGSV 158
++V + G+ EI+ + D E+L + Y +EG+ P WY D +R F ++
Sbjct: 989 KTVAAKLSGMKEILFPKSNLADWEQLPD-YVKEGLTGVPVAWYDDVFKRVFSNI 1041
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 738 LSRTEXSSFARGDIXPSTVTW 676
L+ E FAR DI PST++W
Sbjct: 503 LTEEEQRKFARLDIEPSTISW 523
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -1
Query: 169 FGSVPH---GGYGLGLERFLCWLLDR 101
FG + H G Y + L+ F+ WLLDR
Sbjct: 396 FGGLHHCILGRYSISLDDFVLWLLDR 421
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 65 EARVETHVPDVVPVQEPAEEALQTQPVAAVRHRAELA 175
+ R + +PD+V V +P EE T+P + E A
Sbjct: 196 KTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVEAA 232
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = -1
Query: 430 EMPERKMTDAIGVPILLCKFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIW 251
E +++ A GV CK I + +++ +++D+++P G G S
Sbjct: 58 EKAAKEIAQANGVKTYTCKCDVTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDM 117
Query: 250 DHEE 239
+EE
Sbjct: 118 TYEE 121
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 612 MSWTGSXPRPKDSSYTNSTRTLKNHR 535
++ TGS P+ K +SYT +++ ++ R
Sbjct: 1264 LTQTGSVPKRKSTSYTRPSKSYRHKR 1289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,369
Number of Sequences: 5004
Number of extensions: 49335
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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