Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l22r
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 292 2e-79
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 83 3e-16
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 78 8e-15
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 40 0.003
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 34 0.098
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 34 0.098
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 34 0.098
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 31 0.69
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 31 0.69
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.91
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.91
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.91
Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a prot... 30 1.6
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC087735-1|AAK31560.2| 98|Caenorhabditis elegans Hypothetical ... 30 2.1
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z68882-16|CAE17745.1| 118|Caenorhabditis elegans Hypothetical p... 28 8.5
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 8.5
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 28 8.5
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 292 bits (717), Expect = 2e-79
Identities = 138/239 (57%), Positives = 164/239 (68%), Gaps = 1/239 (0%)
Frame = -1
Query: 760 LGDVYCIAQSYRAEQFRTRRHLAEYSHVEAECPFITFXXXXXXXXXXXXXXXXXXXXSPE 581
LGDVYCI+QSYRAE+ RTRRHL+EY HVEAEC FITF P
Sbjct: 307 LGDVYCISQSYRAEKSRTRRHLSEYQHVEAECAFITFDQLMDRIEALVCDTVDRLLADPV 366
Query: 580 GQLVYE-LXXXXXXXXXXXKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTD 404
+ + E + KRM Y EAIE+L+ N++ E G + +GEDI E ER+MTD
Sbjct: 367 TKSLIEFVNPGYKAPARPFKRMPYKEAIEWLQKNDVRNEMGEKFVYGEDIAEAAERRMTD 426
Query: 403 AIGVPILLCKFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGY 224
IGVPILL +FP IK+ YM RC DD LTESVD+LMPGVGEIVGGSMRIW ++L+ +
Sbjct: 427 TIGVPILLNRFPHGIKAFYMPRCADDNELTESVDLLMPGVGEIVGGSMRIWKEDQLLAAF 486
Query: 223 KREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 47
++ G+D YYWY DQRK+GSVPHGGYGLGLERF+CWL D HIRDVCLYPRF+ RC P
Sbjct: 487 EKGGLDSKNYYWYMDQRKYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYPRFVGRCAP 545
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical protein
B0464.1 protein.
Length = 531
Score = 82.6 bits (195), Expect = 3e-16
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 5/247 (2%)
Frame = -1
Query: 772 VSGDLGDVYCIAQSYRAEQFRTRRHLAEYSHVEAECPF-ITFXXXXXXXXXXXXXXXXXX 596
++GD VY I +RAE T RH+ E+ ++ E F +
Sbjct: 288 IAGDFEKVYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFNFHYHEVMETIAEVLTQMFKGL 347
Query: 595 XXSPEGQLVY---ELXXXXXXXXXXXKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEM 425
+ + ++ + + Y +AI LR N I E G + + +
Sbjct: 348 QQNYQDEIAAVGNQYPAEPFQFCEPPLILKYPDAITLLRENGI--EIGDEDDLSTPVEKF 405
Query: 424 PERKMTDAIGVPI-LLCKFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWD 248
+ + + +L KFP ++ Y D R + S D+ M G EI+ G+ RI D
Sbjct: 406 LGKLVKEKYSTDFYVLDKFPLSVRPFYTMPDAHDERYSNSYDMFMRGE-EILSGAQRIHD 464
Query: 247 HEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 68
+ L+E K +D + Y D K+G PH G G+GLER L ++IR L+PR
Sbjct: 465 ADMLVERAKHHQVDLAKIQSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFPR 524
Query: 67 FLERCTP 47
+R TP
Sbjct: 525 DPKRLTP 531
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 77.8 bits (183), Expect = 8e-15
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 6/221 (2%)
Frame = -1
Query: 751 VYCIAQSYRAEQFRTRRHLAEYSHVEAECPFIT----FXXXXXXXXXXXXXXXXXXXXSP 584
VY + S+RAE+ ++ HL+E+ +EAE F+ P
Sbjct: 198 VYILGPSFRAERQQSHAHLSEFHMLEAEVAFVETIDEMCTLVESYIQHMISYLNSSKLEP 257
Query: 583 EGQLVYELXXXXXXXXXXXKRMTYIEAIEYL--RANNITKEDGSFYEFGEDIPEMPERKM 410
E ++ R+ Y EA+ L + + +T + G + D+ ++ +
Sbjct: 258 ETAII---GSKIPISNIKFPRIRYDEAVHLLALKGSKVTAKSGFSKKNELDLVKLHDDH- 313
Query: 409 TDAIGVPILLCKFPAEIKSXYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELME 230
PI + +P K YM+R D +LT S D+L+PG+GE+ GGS+R EEL
Sbjct: 314 ------PIFVTHYPVGQKPFYMAR---DGQLTLSFDLLVPGIGELAGGSLREQSAEELQR 364
Query: 229 GYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLL 107
+ GID WY + R+ G P GG+G+G ER L +L+
Sbjct: 365 --RGCGID-----WYLEMRRRGQPPTGGFGIGFERMLQYLI 398
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -1
Query: 304 DVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLER 125
D+++ GV E+ GGS+RI + E K G + G+ PHGG+ LGL+R
Sbjct: 479 DLVINGV-EMGGGSIRIENSEIQRHVLKVLGEPTDEMEHLLNALSHGAPPHGGFALGLDR 537
Query: 124 FLCWLLDRYH----IRDVCLYPR 68
F+ L + +RDV +P+
Sbjct: 538 FVAMLTSDGNPLTPVRDVIAFPK 560
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.098
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R L D +I++V L+P
Sbjct: 460 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 493
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 34.3 bits (75), Expect = 0.098
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R L D +I++V L+P
Sbjct: 542 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 575
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 34.3 bits (75), Expect = 0.098
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 172 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 71
++G P GG+G+G++R L D +I++V L+P
Sbjct: 518 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 256 IWDHEELMEGYKREGIDPSPYYWYTDQR 173
+W H+EL +G+KR G+ + +Y T +R
Sbjct: 966 MWQHKELHDGFKRSGLKEADFYSGTARR 993
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 256 IWDHEELMEGYKREGIDPSPYYWYTDQR 173
+W H+EL +G+KR G+ + +Y T +R
Sbjct: 1136 MWQHKELHDGFKRSGLKEADFYSGTARR 1163
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRT--CAGPYTSSTG*GR 210
G+ P A GS P P R +R+AP R+ P T S GR
Sbjct: 319 GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGR 358
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRT--CAGPYTSSTG*GR 210
G+ P A GS P P R +R+AP R+ P T S GR
Sbjct: 340 GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGR 379
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 97 GTGPGASRGSAPNPARSRREAPSRT--CAGPYTSSTG*GR 210
G+ P A GS P P R +R+AP R+ P T S GR
Sbjct: 325 GSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGR 364
>Z81454-7|CAB76407.1| 378|Caenorhabditis elegans Hypothetical
protein B0391.11 protein.
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 449 LVEGSVFLRNVVGAEILYRFYIRHTFERFLWFFKVRV-EFV-YELSFGRGQDPVHDI-HD 619
++E +F+R+ + E+L+R IR +++ F V +++ +E F R + HD+ +D
Sbjct: 5 VLENPIFIRSCILYEVLHRKPIRESYKNFCEKLGDDVMDYIDFEFWFYRFYEGNHDLNYD 64
Query: 620 QILEP 634
Q LEP
Sbjct: 65 QKLEP 69
>AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a protein
protein 222 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 449 LVEGSVFLRNVVGAEILYRFYIRHTFERFLWFFKVRV-EFV-YELSFGRGQDPVHDI-HD 619
++E +F+R+ + E+L+R IR +++ F V +++ +E F R + HD+ +D
Sbjct: 5 VLENPIFIRSCILNEVLHRKPIRESYKNFCEKLGDDVMDYIDFEFWFYRFYEGNHDLNYD 64
Query: 620 QILEP 634
Q LEP
Sbjct: 65 QKLEP 69
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G+ +PG PGA+ A P ++ P + C AGP
Sbjct: 119 GKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGP 159
>AC087735-1|AAK31560.2| 98|Caenorhabditis elegans Hypothetical
protein Y35H6.3 protein.
Length = 98
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 65 EARVETHVPDVVPVQEPAEEALQTQPVAAVRHRA 166
E+ VE H+P +QE EE T+P R RA
Sbjct: 33 ESSVEDHIPSCSEMQEEIEELNSTKPTPKSRKRA 66
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G+ +PG PGA A P ++ P + C AGP
Sbjct: 118 GKPGKPGKPGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGP 158
>Z68882-16|CAE17745.1| 118|Caenorhabditis elegans Hypothetical
protein C47E12.13 protein.
Length = 118
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 425 HFRDVLSKLVEGSVFLRNVVGAEILYRFY 511
+FR+V++ EGS F R V G E +YRF+
Sbjct: 66 NFRNVIN---EGSKFFRKVFGHENVYRFH 91
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G +PG PGAS A P P + C AGP
Sbjct: 129 GKPGTPGKPGAPGNPGASGKGAAAPCEPSTPPPCQPCPAGP 169
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTC-AGP 183
G G D PG PG++ G+ N A +TC AGP
Sbjct: 149 GQAGLDGLPGAPGQPGSNGGAGSNGASEGSAGGCKTCPAGP 189
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +1
Query: 64 GSEGRDTRPGCGTGPG-----ASRGSAPNPARSRREAPSRTCAGPYT 189
G +G D +PG G PG +RG A NP + P P T
Sbjct: 224 GGKGHDGKPGLGGQPGVRGAVGARGDAGNPGLPGPQGPKGEPGNPGT 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,879,541
Number of Sequences: 27780
Number of extensions: 294640
Number of successful extensions: 1098
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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