Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l22r
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 188 PVVRARVDAFALVTFHQLLVVPYPHGAA 271
           P+   ++  F L T HQL  V  PH  A
Sbjct: 152 PMCSPKLHVFDLNTSHQLKQVVMPHDIA 179


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 286 VGEIVGGSMRIWDHEELMEGYKREGIDPSP 197
           V  +  G   +  HE+L+E + R G  P+P
Sbjct: 130 VRALAAGGNHLPFHEKLVESFPRGGSLPTP 159


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 757 GDVYCIAQSYRAE 719
           G+ +CI QS+ AE
Sbjct: 123 GEAFCIIQSFAAE 135


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 253 WDHEELMEGYKREGIDPSPYYWYT 182
           WD   ++EG + +  D    YW T
Sbjct: 262 WDGSNMVEGNESDHNDGRLRYWRT 285


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 363 SAGNLHSSIGTPMASVIFRSGISGM 437
           + G L  S G PM  +   S +SGM
Sbjct: 405 AGGQLPPSAGAPMPPIPNMSNMSGM 429


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +2

Query: 137 QPVAAVRHRAELALVRIPVVRARVDAFALVTFHQLLVVPY--PHGAADDLPDARHQHVDG 310
           QP  AV  +   A    P V   +D FAL T  + ++  Y   HG      +  H  V+ 
Sbjct: 434 QPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVED 493

Query: 311 LGE 319
            GE
Sbjct: 494 GGE 496


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +2

Query: 137 QPVAAVRHRAELALVRIPVVRARVDAFALVTFHQLLVVPY--PHGAADDLPDARHQHVDG 310
           QP  AV  +   A    P V   +D FAL T  + ++  Y   HG      +  H  V+ 
Sbjct: 434 QPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVED 493

Query: 311 LGE 319
            GE
Sbjct: 494 GGE 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,829
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)