Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l20r
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    82   6e-17
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    31   0.12 
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.48 
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    29   0.48 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.64 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.84 
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    28   1.1  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    27   1.9  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   5.9  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = -3

Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERL 493
           R  N + K + F+++ SFE +DAAIEAMNNQ+  N+PI+VSYAFK++ KGERHG  AER 
Sbjct: 133 RDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERK 192

Query: 492 LXA 484
           L A
Sbjct: 193 LAA 195


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGE 520
           N K + F F+N+A+ E +  A++ +N++    + + V  A KK  + E
Sbjct: 297 NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -3

Query: 660 RKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 544
           R+   +A++NF + E  + A++ +N      RP  + ++
Sbjct: 118 RRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 544
           +S+AF+ F   E +  A+E MN    C+R I VS A
Sbjct: 46  RSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPA 81


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISV-SYAFKKDVKGERH 514
           R   R+ + F F++FA+ E    AIE MN +   +  + V S  F++D + + +
Sbjct: 251 RGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDEN 304


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 645 FAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
           FAF+     +A++ A+ ++N      RPI+V +A  KD
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 427 YVDGACAN-GTTAAAHTIPDA--TTRTSNECATTTTIAYVSAAATAIFD 290
           YV GA     TT A  + P    T+ ++N  ATTTT    +A +TA+ D
Sbjct: 543 YVGGATKTPSTTKAVESTPSTLPTSASTNAAATTTTKKPKAAKSTAVRD 591


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = -2

Query: 538 EGCERGEARISSREITXCTKS--TIACGQTSPVVCRCT---TYVDGACANGTTAAAHTIP 374
           E CE+ + +   ++   C +S     CG+ + +  R     ++ DG C     A   T P
Sbjct: 78  ESCEKKKPKCCEKKKPKCCESEQNNGCGRRNQLARRLAFLGSFGDGDCDGCNEAFTVTGP 137

Query: 373 DATTRTSNECATTTTIAYVSAAAT 302
               RT  +  T  T A  +AAAT
Sbjct: 138 ITYFRTCPDPLTGITPAVAAAAAT 161


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 544
           + F F++F++ E + +AI+ +N+Q    R ++V  A
Sbjct: 142 RGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 544
           K F  + F +   + ++IE +N      RP+ +SYA
Sbjct: 320 KGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 657 KFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVK 526
           K + F F++F   +    A    N +Y  +RP+ +S A   DVK
Sbjct: 68  KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA-TSDVK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,779
Number of Sequences: 5004
Number of extensions: 19172
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)