Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l20r
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 140 4e-33
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 140 4e-33
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 140 4e-33
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 140 4e-33
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 140 4e-33
AL591493-1|CAI12553.1| 190|Homo sapiens splicing factor 3b, sub... 140 4e-33
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 140 4e-33
AL590487-1|CAI12647.1| 190|Homo sapiens splicing factor 3b, sub... 140 4e-33
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 140 4e-33
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 33 0.74
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 33 0.74
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 33 0.74
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 33 0.74
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 33 0.74
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 33 0.74
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 33 0.74
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 33 0.74
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 33 0.74
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 33 0.74
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 33 0.74
U28686-1|AAB17212.1| 157|Homo sapiens RNPL protein. 31 3.9
D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding pro... 31 3.9
BC006825-1|AAH06825.1| 157|Homo sapiens RNA binding motif (RNP1... 31 3.9
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 31 3.9
M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein. 31 5.2
BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein. 31 5.2
BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein. 31 5.2
BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein. 31 5.2
AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens ... 31 5.2
AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens ... 31 5.2
AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein. 31 5.2
BC021715-1|AAH21715.1| 261|Homo sapiens serine-arginine repress... 30 6.9
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>AL591493-1|CAI12553.1| 190|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 190
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 99 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 158
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 159 SQADRPHQLFADAP 172
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>AL590487-1|CAI12647.1| 190|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 190
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 99 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 158
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 159 SQADRPHQLFADAP 172
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 140 bits (339), Expect = 4e-33
Identities = 65/74 (87%), Positives = 68/74 (91%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K +AFINFASF+ASDAAIEAMN QY CNRPI+VSYAFKKD KGERHGSAAERLL AQNPL
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
S ADRPHQLFADAP
Sbjct: 202 SQADRPHQLFADAP 215
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 33.5 bits (73), Expect = 0.74
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVS-YAFKKDVKGERHGSAAE 499
K +AF++F + EA+D AIE MN +R + V + +K+ + E A E
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 224 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>U28686-1|AAB17212.1| 157|Homo sapiens RNPL protein.
Length = 157
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 660 RKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHG 511
++ + F FI F + E + A+ AMN + R I V +A K +G R G
Sbjct: 44 QRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA-GKSARGTRGG 92
>D12799-1|BAA02244.1| 193|Homo sapiens polyadenylate binding
protein II protein.
Length = 193
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 35 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 80
>BC006825-1|AAH06825.1| 157|Homo sapiens RNA binding motif (RNP1,
RRM) protein 3 protein.
Length = 157
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 660 RKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHG 511
++ + F FI F + E + A+ AMN + R I V +A K +G R G
Sbjct: 44 QRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA-GKSARGTRGG 92
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 672 RS*NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 535
R N K K F F+++ E ++ A+E MN + + I V A KK
Sbjct: 3 RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 48
>M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein.
Length = 707
Score = 30.7 bits (66), Expect = 5.2
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 517
N K K +AFI FASFE DA EA+N+ CN+ A + +++G R
Sbjct: 519 NGKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLELQGPR 561
>BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 30.7 bits (66), Expect = 5.2
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 517
N K K +AFI FASFE DA EA+N+ CN+ A + +++G R
Sbjct: 291 NGKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLELQGPR 333
>BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 30.7 bits (66), Expect = 5.2
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 517
N K K +AFI FASFE DA EA+N+ CN+ A + +++G R
Sbjct: 291 NGKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLELQGPR 333
>BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 30.7 bits (66), Expect = 5.2
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 517
N K K +AFI FASFE DA EA+N+ CN+ A + +++G R
Sbjct: 291 NGKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLELQGPR 333
>AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar
to Nucleolin. ).
Length = 603
Score = 30.7 bits (66), Expect = 5.2
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 517
N K K +AFI FASFE DA EA+N+ CN+ A + +++G R
Sbjct: 412 NGKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLELQGPR 454
>AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens
cDNA FLJ34423 fis, clone HHDPC2008123, highly similar to
NUCLEOLIN. ).
Length = 687
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPI 559
N K K +AFI FASFE + A+ + N + R I
Sbjct: 496 NGKSKGYAFIEFASFEDAKEALNSCNKREIGGRAI 530
>AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein.
Length = 710
Score = 30.7 bits (66), Expect = 5.2
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 517
N K K +AFI FASFE DA EA+N+ CN+ A + +++G R
Sbjct: 519 NGKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLELQGPR 561
>BC021715-1|AAH21715.1| 261|Homo sapiens serine-arginine repressor
protein (35 kDa) protein.
Length = 261
Score = 30.3 bits (65), Expect = 6.9
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 660 RKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 544
R+ + FA++ F ++ A+ +N ++ C R I + +A
Sbjct: 48 RRPRGFAYVQFEDVRGAEDALYNLNRKWVCGRQIEIQFA 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,013,928
Number of Sequences: 237096
Number of extensions: 751028
Number of successful extensions: 2339
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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