Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l20r
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 122 2e-28
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 122 2e-28
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 35 0.064
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 35 0.064
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 35 0.064
U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical pr... 33 0.15
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 33 0.19
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.4
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 29 3.2
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 7.3
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z48585-1|CAA88486.1| 154|Caenorhabditis elegans Hypothetical pr... 27 9.7
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 122 bits (295), Expect = 2e-28
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K FAFINFASFEASD A+EAMN Q+ CNR I+VSYAFK+D KGERHG+AAER+L AQNPL
Sbjct: 142 KGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPL 201
Query: 471 SHADRPHQLFADAP 430
DRPHQ+F+D P
Sbjct: 202 FPKDRPHQVFSDVP 215
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 122 bits (295), Expect = 2e-28
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLXAQNPL 472
K FAFINFASFEASD A+EAMN Q+ CNR I+VSYAFK+D KGERHG+AAER+L AQNPL
Sbjct: 152 KGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPL 211
Query: 471 SHADRPHQLFADAP 430
DRPHQ+F+D P
Sbjct: 212 FPKDRPHQVFSDVP 225
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
N + K F F+ F E + +A+ MN++ C++P+ V+ A +K+
Sbjct: 293 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 336
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
N + K F F+ F E + +A+ MN++ C++P+ V+ A +K+
Sbjct: 290 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 333
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
N + K F F+ F E + +A+ MN++ C++P+ V+ A +K+
Sbjct: 353 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 396
>U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical
protein C06G1.2 protein.
Length = 182
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -2
Query: 529 ERGEARISSREITXCTKSTIACGQTSPVVCRCTTYVDGA-CANGTTAAAHTIPDA-TTRT 356
E I T T +T+ +T+ V TT V+ TT A T +A TT T
Sbjct: 33 EGSGVEIEKASTTEATTTTVV--ETTTTVDSTTTEVETTPTTEATTTVAETTTEAETTTT 90
Query: 355 SNECATTTTIAYVSAAAT 302
+ E TTTT A + AAT
Sbjct: 91 TVESTTTTTEATTTEAAT 108
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
N + K F F+ F E + +A+ MN++ C++P+ V+ +K+
Sbjct: 353 NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKE 396
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 651 KSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFK 538
+ FAFI FA ++ A+E MN RP+ V+ A K
Sbjct: 46 RGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = -2
Query: 493 TXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTTIAYVS 314
T T +T T+P T A T+ T P TT+T+ + TTTT +
Sbjct: 220 TTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTT 279
Query: 313 AAAT 302
T
Sbjct: 280 PTTT 283
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = -2
Query: 493 TXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTT 329
T T +T T+ TT T T+P TT T TTTT
Sbjct: 178 TTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTT 232
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 424 VDGACANGTTAAAHTIPD-ATTRTSNECATTTT 329
+DG+ N T + T P +TT TS+ +TTTT
Sbjct: 315 IDGSTGNSTGSTVETTPSTSTTTTSSTTSTTTT 347
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
N + K F F+ F E + AA+ MN++ +P+ V+ A +K+
Sbjct: 379 NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKE 422
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 663 NRKFKSFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 532
N + K F F+ F E + AA+ MN++ +P+ V+ A +K+
Sbjct: 379 NGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKE 422
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = -2
Query: 496 ITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAA-------HTIPDATTRTSNECAT 338
+T C T +C Q V Y C+ AAA +T+PD TTR N C+
Sbjct: 156 LTDCANRTASC-QDIDFVDMMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTR-GNYCSA 213
Query: 337 TTTIAY 320
T+ AY
Sbjct: 214 TSVSAY 219
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 433 TTYVDGACANGTTAAAHTIPDATTRTSNECATTTTIAYVS 314
TT TT A T+P+A + T+ + TTT A ++
Sbjct: 215 TTTTTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIA 254
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -2
Query: 409 ANGTTAAAHTIPDATTRTSNECATTTTIAYVSAAATAIFD 290
++ T + AH +P+A T++SN+ + +T++ + + D
Sbjct: 518 SSSTRSRAHALPNAETKSSNKSSESTSLLPIDPELVGLED 557
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -2
Query: 508 SSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTT 329
S +T + S+ A TSP TT D + +G+T + T +++ T + + ++
Sbjct: 520 SGTTVTLPSGSSTATAGTSPQASTVTTVTDISTVSGSTVTSQT-AESSLSTESPTSAGSS 578
Query: 328 IAYVSAAAT 302
I+ VS ++
Sbjct: 579 ISTVSTVSS 587
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/70 (34%), Positives = 28/70 (40%)
Frame = -2
Query: 511 ISSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTT 332
++ R T T+A +TSP R TT TT A T T TS TTT
Sbjct: 161 VTPRTTRSSTARTVATTKTSPSTLRTTTK-----PPTTTTIATTRITTKTTTSPPPFTTT 215
Query: 331 TIAYVSAAAT 302
SAA T
Sbjct: 216 VTTTTSAART 225
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 508 SSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTT 329
+S T T + T+P TT TT + T TT T+ TTTT
Sbjct: 68 TSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTTTT 127
Query: 328 I 326
+
Sbjct: 128 M 128
>Z48585-1|CAA88486.1| 154|Caenorhabditis elegans Hypothetical
protein ZK673.1 protein.
Length = 154
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 493 TXCTKSTIACGQT--SPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSN 350
T CT+ T C +P++ + G C G+TAA D++T +N
Sbjct: 73 TDCTQYTSLCSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNCAN 122
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 517 ARISSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECAT 338
A++ +++ T K T+ Q + V TT + TTAA T P T T+ E +
Sbjct: 729 AKLEAKQHTEDEKVTVETKQETAVTPAPTT----SEKTSTTAAPSTKPAEETTTTTEAPS 784
Query: 337 TTT 329
TTT
Sbjct: 785 TTT 787
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,761,210
Number of Sequences: 27780
Number of extensions: 116699
Number of successful extensions: 498
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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