Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l20r
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   8.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   8.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 657 KFKSFAFINFASFEASDAAIEAMNNQYXCNRPISV 553
           ++K F + NF S E   AAI++    Y  N PI V
Sbjct: 37  QWKYFDY-NFGSDEKRQAAIQSGEYNYKNNVPIDV 70


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   CKITLFISVLSLSALNNY 56
           C + +F+S++  + +NNY
Sbjct: 283 CSVFVFLSLMEFAVVNNY 300


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 376 PDATTRTSNECATTTTI 326
           P+A+   + +CA+TTTI
Sbjct: 741 PNASPSPAEQCASTTTI 757


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 421 DGACANGTTAAAHTIPDATTRTSNEC 344
           +G C N        +PDA +   N+C
Sbjct: 50  EGPCTNEGRELKKILPDALSTGCNKC 75


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 421 DGACANGTTAAAHTIPDATTRTSNEC 344
           +G C N        +PDA +   N+C
Sbjct: 50  EGPCTNEGRELKKILPDALSTGCNKC 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,341
Number of Sequences: 438
Number of extensions: 1197
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)