Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11l20f
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 235 3e-63
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 129 2e-31
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 81 1e-16
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 66 3e-12
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 64 2e-11
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 58 9e-10
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 56 5e-09
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 9e-09
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 54 1e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 54 2e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 53 3e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 53 3e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 52 8e-08
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 50 3e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 7e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 45 9e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 44 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 2e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 43 3e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 3e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 43 4e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 5e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 8e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 8e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.002
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.003
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 36 0.004
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 35 0.007
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 34 0.013
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.013
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.017
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 33 0.023
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.030
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.040
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.040
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.069
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.37
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.49
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 0.85
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.1
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 1.5
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 27 2.6
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 3.4
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 4.5
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 7.9
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 235 bits (575), Expect = 3e-63
Identities = 102/175 (58%), Positives = 146/175 (83%), Gaps = 1/175 (0%)
Frame = +2
Query: 50 ERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDA 229
+RNQDATIY+G LD++VT+S+L+EL +Q+GPVVN+H+P+DRV +H G+GF EF+ E+D
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 230 DYAIKVMNMIKLYGKPVRVNKASAHQ-KNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 406
+YA +++N +KL+GKP+RVN+AS + N +GAN+F+GNLDP VDE++LYDTFSA G +
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125
Query: 407 LQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKD 571
++ P+V RD E G SK + F+++ SFE +DAAIEAMNNQ+L N+PI+VSYAFK++
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 129 bits (312), Expect = 2e-31
Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Frame = +2
Query: 35 AGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFM 214
A P A++YVG LD VTE++L+ELF GPV ++ + +D VT+ GY +V F
Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129
Query: 215 GEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVG-ANVFIGNLDPEVDEKLLYDTFS 391
ED + A+ +N + G+P R+ + +G NVFI NLDP +D K L+DTFS
Sbjct: 130 NMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFS 189
Query: 392 AFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSY 556
AFG IL KV D E GN+K + F++F S E+++AAIE +N L ++ + V +
Sbjct: 190 AFGKILSC-KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 89.8 bits (213), Expect = 2e-19
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
+Y+ LD +TE +LF Q G + ++ + KD+ +G+GFV + E A A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321
Query: 251 NMIKLYGKPVRVNKASA-HQKNLDV----------------GANVFIGNLDPEVDEKLLY 379
N + GK + V +A H++ ++ G N+FI NL EVD++ L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 380 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 559
FSAFG I + K+M D E G SK F F+ + + E ++ A+ MN + L +P+ V+ A
Sbjct: 382 AEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 560 FKKDV 574
+K+V
Sbjct: 440 QRKEV 444
Score = 71.3 bits (167), Expect = 9e-14
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 7/183 (3%)
Frame = +2
Query: 41 PIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGE 220
P + +++ LD + L + F G +++ + D + +GYGFV F
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNA-KGYGFVHFDSV 218
Query: 221 EDADYAIKVMNMIKLYGKPVRV-NKASAHQKNLDVGA------NVFIGNLDPEVDEKLLY 379
E A+ AI+ +N + L K V V + S ++ V A NV+I NLD E+ E+
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 380 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 559
D F FG I +++D + + F F+N+A+ E + A++ +N++ + + V A
Sbjct: 279 DLFGQFGEITSL-SLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336
Query: 560 FKK 568
KK
Sbjct: 337 QKK 339
Score = 55.6 bits (128), Expect = 5e-09
Identities = 24/95 (25%), Positives = 49/95 (51%)
Frame = +2
Query: 275 PVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK 454
P + + A++++G LDP V E +L++ F++ G + +V RD T S
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASI-RVCRDAVTRRSL 121
Query: 455 AFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 559
+A++NF + E + A++ +N + RP + ++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
Score = 39.5 bits (88), Expect = 3e-04
Identities = 25/91 (27%), Positives = 45/91 (49%)
Frame = +2
Query: 14 KSFEKMAAGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQG 193
K +E+M + + Q +++ L D V + L F G + + + D ++ +G
Sbjct: 348 KRYEQMKLEKM-NKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS-KG 405
Query: 194 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRV 286
+GFV + E+A+ A+ MN L GKP+ V
Sbjct: 406 FGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 81.0 bits (191), Expect = 1e-16
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Frame = +2
Query: 59 QDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYA 238
Q T+++G L+ VTE+ + +++ G V V + ++R T + GY FVEF +A A
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 239 IKVMNM-IKLYGKPVRVNKASA---HQKNLDVGA--NVFIGNLDPEVDEKLLYDTFSAFG 400
+ + N I ++N AS +K++ + ++F+G+L P V+E +Y F++
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 401 VILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKK 568
++ K+M DP+T S+ + F+ F +A+ M Q +RPI V A K
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 38.7 bits (86), Expect = 6e-04
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +2
Query: 68 TIYVGGLDDRVTESLLWELFVQS-GPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIK 244
+I+VG L V E ++ LF + + D T +GYGFV F E D A+
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 245 VMNMIKLYGKPVRVNKASAHQK 310
M +P+RV A+ K
Sbjct: 247 EMQGQICGDRPIRVGLATPKSK 268
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 66.1 bits (154), Expect = 3e-12
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Frame = +2
Query: 41 PIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGE 220
P + N+ T++VG L V + L + F + G +V + D + +GYG+V+F
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 221 EDADYAIKVMNMIKLYGKPVRVNKAS---------AHQKNLDVG-------ANVFIGNLD 352
E A A+ ++ G+ V ++ ++ A Q+ + G VF+GNL
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 353 PEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLC 532
E L F G I Q+ ++ DP++G K F ++ F+ +++ +E MN ++
Sbjct: 375 FNATEDDLSTAFGGCGDI-QSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIA 432
Query: 533 NRPISVSYA 559
RP + ++
Sbjct: 433 GRPCRLDFS 441
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/93 (26%), Positives = 49/93 (52%)
Frame = +2
Query: 272 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 451
+P ++ K S VF+G L VD++ L F +G I+ +V+ D ++G S
Sbjct: 248 RPAKITKPSQDSNET---CTVFVGRLSWNVDDQWLGQEFEEYGTIVGA-RVIMDGQSGRS 303
Query: 452 KAFAFINFASFEASDAAIEAMNNQYLCNRPISV 550
K + +++F + EA+ AA+ A + + R +++
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 63.7 bits (148), Expect = 2e-11
Identities = 47/190 (24%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Frame = +2
Query: 8 AVKSFEKMAAGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTH 187
A++S E A +D +++GGL+ T+ L + F Q G V++ + +D T
Sbjct: 144 AMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRS 203
Query: 188 QGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDE 367
+G+GF+ F + + + + L GK + +A ++ + A +F+G + + E
Sbjct: 204 RGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPREEQ-EKTAKMFVGGVPGDCTE 260
Query: 368 KLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA-MNNQYLC--NR 538
+ + F+ FG +L +M D +TG + F F+ + +++A+EA M+ Y+ +
Sbjct: 261 EEFRNFFNQFGRVLDA-TLMMDKDTGRPRGFGFVTY----ENESAVEATMSQPYITIHGK 315
Query: 539 PISVSYAFKK 568
P+ V A K
Sbjct: 316 PVEVKRATPK 325
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 58.0 bits (134), Expect = 9e-10
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Frame = +2
Query: 56 NQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADY 235
N ++T++V L + + L F GP+ + + + T ++GYGFV F EDA
Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Query: 236 AIKVMNMIKLYGKPVRVNKASAHQKN-LDVGAN--------------VFIGNLDPEVDE- 367
A K + KL+G+ +R++ A+ +++ +D N + I NL + +
Sbjct: 62 AAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKP 121
Query: 368 KLLYDTFSAFGVILQTPKVMRDPETGNSK--AFAFINFASFEASDAAIEAMNNQYLCNRP 541
+ L FS FG + + ++ P G + FAF+ +A++ A+ ++N + RP
Sbjct: 122 QHLEPHFSKFGKV----REIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRP 177
Query: 542 ISVSYAFKKD 571
I+V +A KD
Sbjct: 178 IAVDWAVSKD 187
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 68 TIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKV 247
T++V L TE L+ F Q GP+ + KD T G GF++F E+D +++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEM 337
Query: 248 MNMI 259
+ +
Sbjct: 338 ASQL 341
Score = 33.1 bits (72), Expect = 0.030
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 475
VF+ NL E E+ LY+ F FG L K+++DP T S FI F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGP-LAYAKLVKDPATDRSLGRGFIKF 325
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 55.6 bits (128), Expect = 5e-09
Identities = 27/87 (31%), Positives = 48/87 (55%)
Frame = +2
Query: 35 AGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFM 214
+ P N ++V G+ R+ E L ++F + G V +V + ++ VT+ +G+GF+ F
Sbjct: 91 SAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFS 150
Query: 215 GEEDADYAIKVMNMIKLYGKPVRVNKA 295
E+A AI +N + YG+ + V KA
Sbjct: 151 TVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/88 (29%), Positives = 51/88 (57%)
Frame = +2
Query: 296 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 475
SA + + ++G ++F+ + + E L FS FG + ++MR+P T S+ F F++F
Sbjct: 91 SAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHV-RIMREPVTKASRGFGFLSF 149
Query: 476 ASFEASDAAIEAMNNQYLCNRPISVSYA 559
++ E + +AI+ +N+Q R ++V A
Sbjct: 150 STVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 54.8 bits (126), Expect = 9e-09
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +2
Query: 326 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 505
A V +GNL P V E LLY+ F FG I+ + E +++AF+ F E + A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV--ALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
Query: 506 EAMNNQYLCNRPISVSYA 559
E MN LC+R I VS A
Sbjct: 64 ENMNYSILCDRCIRVSPA 81
Score = 52.0 bits (119), Expect = 6e-08
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +2
Query: 65 ATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIK 244
AT++VG L VTESLL+ F+ G +++V + + + + Y FVEF EDA A++
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAME 64
Query: 245 VMNMIKLYGKPVRVNKAS 298
MN L + +RV+ A+
Sbjct: 65 NMNYSILCDRCIRVSPAN 82
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 54.0 bits (124), Expect = 1e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +2
Query: 311 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 490
++ G VF+GN+ +V E+ + + F+ G + +T K++ DPETG+ K + F F E
Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPV-KTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 491 SDAAIEAMNNQYLCNRPISVSY 556
+ A+ +NN L R I V +
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEF 82
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
++VG + V+E + E+F Q GPV + D T + +GYGF EF E A++ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 251 NMIKLYGKPVRV 286
N +L + +RV
Sbjct: 69 NNSELGPRKIRV 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 53.6 bits (123), Expect = 2e-08
Identities = 40/160 (25%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Frame = +2
Query: 113 LWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN- 289
L +LF Q+G V+ + ++ ++ +G G V ++A +AI++++ G+ + V
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRS-RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 257
Query: 290 KASAHQKNLDVGAN----------VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPE 439
AH K D+ + +++GNL ++ L D F+ G +++ ++ +P
Sbjct: 258 DRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRA-RIAYEP- 315
Query: 440 TGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 559
TG SK F + F + + ++IE +N RP+ +SYA
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
Score = 41.5 bits (93), Expect = 9e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
IYVG L ++ L +LF G V+ + + T +G+G V+F E DA +I+ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 340
Query: 251 NMIKLYGKPVRVNKA 295
N + G+P++++ A
Sbjct: 341 NGYRYGGRPLQLSYA 355
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 53.2 bits (122), Expect = 3e-08
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 15/194 (7%)
Frame = +2
Query: 14 KSFEKMAAGPIAERNQDA-TIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQ 190
+S + + ++E +D T++V L +R+T L++ F Q+GPV + + +D+++ +
Sbjct: 222 RSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSK 281
Query: 191 GYGFVEFMGEEDADYAIKVMNMIKLYGKP--VRVNKASAHQKNLDVGA------------ 328
G +VEF E+ AI + +L G P V++ +A ++K +
Sbjct: 282 GVAYVEFCHEDSVQAAIALSGK-RLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFH 340
Query: 329 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 508
+ + N+ + ++ + F FG I + + RD + SK F +I + + ++ A+E
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDI-EFVHLQRD-DQNRSKGFGYIQYRNPISARNALE 398
Query: 509 AMNNQYLCNRPISV 550
MN L R + V
Sbjct: 399 KMNGFDLAGRNMRV 412
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 293 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 472
+S HQ D A ++IGNLD +++E + FS FG + ++RD ETG SK FAF+
Sbjct: 21 SSWHQDYSD-SAYIYIGNLDFDLNEDDILCVFSEFGEPVDI-NLVRDKETGKSKGFAFLK 78
Query: 473 FASFEASDAAIEAMNNQYLCNRPISVSY 556
+ ++ A++ M N L +R + V +
Sbjct: 79 YEDQRSTVLAVDNMTNVKLLDRLVRVDH 106
Score = 44.8 bits (101), Expect = 9e-06
Identities = 21/84 (25%), Positives = 47/84 (55%)
Frame = +2
Query: 56 NQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADY 235
+ A IY+G LD + E + +F + G V++++ +D+ T +G+ F+++ +
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVL 87
Query: 236 AIKVMNMIKLYGKPVRVNKASAHQ 307
A+ M +KL + VRV+ ++++
Sbjct: 88 AVDNMTNVKLLDRLVRVDHVASYK 111
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 51.6 bits (118), Expect = 8e-08
Identities = 26/76 (34%), Positives = 47/76 (61%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 511
+F+GNL +V+++ LY FS + +++T KV+RD E G ++ F F++F + A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKT-KVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 512 MNNQYLCNRPISVSYA 559
N +Y+ +RP+ +S A
Sbjct: 90 KNGKYIGSRPVKLSRA 105
Score = 38.3 bits (85), Expect = 8e-04
Identities = 22/84 (26%), Positives = 46/84 (54%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
++VG L + V + L++ F + +V + +DR +T +G+GFV F + A +
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKT-RGFGFVSFKDSDQFLKAWREK 90
Query: 251 NMIKLYGKPVRVNKASAHQKNLDV 322
N + +PV++++A++ K +V
Sbjct: 91 NGKYIGSRPVKLSRATSDVKPNEV 114
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 49.6 bits (113), Expect = 3e-07
Identities = 28/104 (26%), Positives = 51/104 (49%)
Frame = +2
Query: 59 QDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYA 238
Q +YVG L TE ++ LF + G + + M DR T+T G+ FVE+ +DA +
Sbjct: 30 QSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
Query: 239 IKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEK 370
+K ++ L + +R + +++ G G + E+ E+
Sbjct: 90 LKYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREE 133
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 48.4 bits (110), Expect = 7e-07
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +2
Query: 191 GYGFVEFMGEEDADYAIKVMNMIKLYGKPVR--VNKASAHQKNLDVGANV-FIGNLDPEV 361
G+G + E+ + + I G+ + K + KNL V ++G L
Sbjct: 57 GFGSSDDDEEDSPNALVNTSRQIMDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGF 116
Query: 362 DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYL 529
EK + FS FG +L+ ++ R+ +TG+SK +AFI F S + ++ E M+N L
Sbjct: 117 YEKQMRMYFSQFGPVLRL-RMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLL 171
Score = 46.4 bits (105), Expect = 3e-06
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +2
Query: 8 AVKSFEKMAAGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTH 187
A K+ +K + + + +YVG L E + F Q GPV+ + M ++R T +
Sbjct: 86 AEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSS 145
Query: 188 QGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQ--KNLDVGANV 334
+ Y F+EF + A+ + M+ LYGK ++ Q +N+ GA+V
Sbjct: 146 KHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADV 196
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.8 bits (101), Expect = 9e-06
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +2
Query: 50 ERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDA 229
ER+ AT+ V L D E L +LF + G + V++ KD+ T +G+ FV + D
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYY---DR 253
Query: 230 DYAIKVMNMIKLYG 271
D AIK + + YG
Sbjct: 254 DCAIKARDRLDGYG 267
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +2
Query: 296 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 475
S ++ D A + + NL + E+ L D F FG I Q + +D ETG +K FAF+
Sbjct: 192 SMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGI-QRVYLAKDKETGRAKGFAFV-- 248
Query: 476 ASFEASDAAIEA 511
S+ D AI+A
Sbjct: 249 -SYYDRDCAIKA 259
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 44.4 bits (100), Expect = 1e-05
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 56 NQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADY 235
N +YVG + + E + ++F QSGPV + + D + +GYGF E+ A
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAAS 61
Query: 236 AIKVMNMIKLYGKPVRVNKASAHQ-KNLD 319
A++ +N + +RV+ +A Q + LD
Sbjct: 62 AVRNLNNYDAGTRRLRVDFPTADQIRRLD 90
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 511
V++GN+ E+ E+ + D F G + V+ DPE+G K + F + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVI-DPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 512 MNNQYLCNRPISVSY 556
+NN R + V +
Sbjct: 66 LNNYDAGTRRLRVDF 80
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 511
+F+ L+P ++ L FS FG I+ +V+RD ETG+S +AFI F + E+ + A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISC-QVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 512 MNNQYLCNRPISVSYA 559
M N + + I V ++
Sbjct: 305 MQNVLIDDSRIHVDFS 320
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 122 LFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYA-IKVMNMI 259
+F + G +++ + +D+ T Y F+EF +E + A K+ N++
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVL 309
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +2
Query: 200 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 379
++ F A A+ +N + +RV+ S H D VF+GNL E +E+ L+
Sbjct: 230 YIVFRDSSSARSALS-LNGTMFMDRHLRVDSVS-HPMPQDTKRCVFVGNLAFEAEEEPLW 287
Query: 380 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 505
F G I +++RDP+T K FA+I F D A+
Sbjct: 288 RYFGDCGSI-DYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
++VG L E LW F G + V + +D T +G+ +++F D A+ +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 251 NMIKLYGKPVRVNKASA 301
G+ +R+ +A +
Sbjct: 332 EKKMPEGRTLRIMRAKS 348
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.2 bits (97), Expect = 3e-05
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Frame = +2
Query: 161 PKDRVTQTHQGYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN------KASAHQKNLD- 319
PK G+GFVEF + A A+ MN L G + + A+A + D
Sbjct: 656 PKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDS 715
Query: 320 ---VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 490
G + I NL E +K + A+G L++ +V + + +++ FAF F +
Sbjct: 716 SKPKGTKILIKNLPFEATKKDVQSLLGAYGQ-LRSVRVPKKFDR-SARGFAFAEFVTARE 773
Query: 491 SDAAIEAMNNQYLCNRPISVSYA 559
+ A+ A+ N +L R + + YA
Sbjct: 774 AANAMRALKNTHLLGRHLVLQYA 796
Score = 36.3 bits (80), Expect = 0.003
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
+++ L E L LF G + VHMP D+ T +G+ +++F +DA A +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 251 NMIKLYGKPVRVNKASAHQKNL 316
+ G+ + V A A L
Sbjct: 385 DAKPFQGRLLHVLPAKARSSIL 406
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
I V G+ TE + +LF GPV N+H+ DR T +GY +E+ E A A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 251 NM 256
N+
Sbjct: 72 NL 73
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 42.7 bits (96), Expect = 4e-05
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Frame = +2
Query: 143 VVNVHMPKDRVTQ-THQGYGFVEFMGEEDADYAI----KVMN----MIK----LYGKPVR 283
+ +HMP + + ++G+ +V+F E+ A+ K +N +IK G+P +
Sbjct: 149 ITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSK 208
Query: 284 ----VNK-ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGN 448
++K AS + + +F+GNLD E + L + F G I + ++M +TG
Sbjct: 209 PANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRV-RLMTFEDTGK 267
Query: 449 SKAFAFINFASFEASDAAIEAMNNQY 526
K F F++F + A+E +N +
Sbjct: 268 CKGFGFVDFPDIDTCMKAMELGHNSW 293
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +2
Query: 17 SFEKMAAGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGY 196
+ K A+ +++ + ++VG LD T++ L E F Q G + V + T +G+
Sbjct: 212 TLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGF 271
Query: 197 GFVEFMGEEDADYAIKVMNM 256
GFV+F D D +K M +
Sbjct: 272 GFVDF---PDIDTCMKAMEL 288
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 5e-04
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 53 RNQDATIYVGGLDDRVTESLLWELFVQSGP-VVNVHMPKDRVTQTHQGYGFVEFMGEEDA 229
R+ + +I+VG L +S L+ F P + + D VT + YGFV F E++
Sbjct: 178 RDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQ 237
Query: 230 DYAIKVMNMIKLYGKPVRVNKAS 298
+A+ M G+P+R++ AS
Sbjct: 238 QHALMHMQGYLCQGRPLRISVAS 260
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 38.3 bits (85), Expect = 8e-04
Identities = 21/74 (28%), Positives = 42/74 (56%)
Frame = +2
Query: 68 TIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKV 247
TI V L VT+ + E+F G + ++ MP + ++ ++GY ++E++ + A A+
Sbjct: 100 TILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDK 159
Query: 248 MNMIKLYGKPVRVN 289
MN +L G+ + V+
Sbjct: 160 MNNAELDGEELFVS 173
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 8e-04
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +2
Query: 68 TIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKV 247
T+++ L ES + F + GP+ + + +++VT GY FV F E D A K
Sbjct: 101 TMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 248 MNMIKLYGKPVRVN 289
+ L G+ + V+
Sbjct: 161 SAGLMLNGRRIVVD 174
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +2
Query: 329 NVFIGNLDPEV--DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFA-SFEASDA 499
N+F+ NLD + + + L + FS FG I ++ + P T SK + F++F+ FEA
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRI-KSCTLASYPSTEISKGYGFVSFSHPFEAVQ- 477
Query: 500 AIEAMNNQYLCNRPISVSYAFKKD 571
AI +N + + V+YA K++
Sbjct: 478 AINTLNGVLFGKKRLFVNYAEKRE 501
Score = 36.7 bits (81), Expect = 0.002
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +2
Query: 71 IYVGGLDDRVTESL--LWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIK 244
++V LDD + + L ELF + G + + + T+ +GYGFV F +A AI
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 245 VMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEV 361
+N + K + VN A + + +F + P V
Sbjct: 481 TLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVV 519
Score = 31.1 bits (67), Expect = 0.12
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 62 DATIYVGGLDDRVTESLLWELFVQSGPVVNVHM---PKDRVTQTHQG--YGFVEFMGEED 226
+ +IYVG L S L ELF G HM K++ T + + F+ F +
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 227 ADYAIKVMNMIKLYGKPVRV 286
AD AI +N G ++V
Sbjct: 79 ADNAIASLNGSSFQGNTLKV 98
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +2
Query: 68 TIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKV 247
T +VG L +TE+ L + F + V ++ + D +T+ +G+G+VEF + A+
Sbjct: 95 TAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-A 151
Query: 248 MNMIKLYGKPVRVNKA 295
++ L G+PVR+ A
Sbjct: 152 LSGEDLMGRPVRITVA 167
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +2
Query: 329 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 508
+V++GN+D V + L F++ G + + ++ D TG+ K FA+I F+ A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVT-ILCDKFTGHPKGFAYIEFSEPSLVPNAL- 113
Query: 509 AMNNQYLCNRPISVS 553
+N L RP+ V+
Sbjct: 114 LLNGSMLHERPLKVT 128
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 36.3 bits (80), Expect = 0.003
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 511
+ + L PE+ E+ + A G + T ++R+ ET S+ FAF F S + S +EA
Sbjct: 73 IILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEA 132
Query: 512 MNNQYLCNRPISVSYAFKK 568
N L I VS F +
Sbjct: 133 -NFPTLVIDGIDVSVRFSR 150
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.9 bits (79), Expect = 0.004
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +2
Query: 68 TIYVGGLDDRVT----ESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADY 235
T+Y+ +++++ + +L LF G V++V K T +G FV F E+A
Sbjct: 27 TLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLENASR 83
Query: 236 AIKVMNMIKLYGKPVRV 286
A+K + LYGKP+ +
Sbjct: 84 ALKDLQGYPLYGKPMMI 100
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.1 bits (77), Expect = 0.007
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 241
+YV +D +V E + F G V +V +PK R Q H+G+G+V +DA+ A+
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RFNQ-HKGFGYVVMTTNQDAENAL 813
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 34.3 bits (75), Expect = 0.013
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 65 ATIYVGGLDDRVTESLLW----ELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDAD 232
A ++V L+ +E L + F Q GP+++V + KD + + Y FV+F +DA
Sbjct: 79 ACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRP---YSFVQFQNTDDAS 135
Query: 233 YAIKVMNMIKLYGKPVRVNKASAHQ 307
A+ L G+ +R+ +A ++
Sbjct: 136 KALSEAQNTILDGRHIRIERAKVNR 160
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 34.3 bits (75), Expect = 0.013
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
++VG L + L F ++G V +V +P D+ + +GY FVEF+ + D K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK-TDVISKAL 152
Query: 251 NMIKLYGKPVRVN 289
K ++N
Sbjct: 153 KFHHTIYKERKIN 165
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.017
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 3/170 (1%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
+Y+ GL ++ L + G V + D T +GYGF F E+ A I M
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
Query: 251 NMIKLYGKPVRVNKASAHQKNLDV-GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVM 427
+ + + ++ Q D N++I NL +E + F +I + +V+
Sbjct: 358 TLCGYQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLFKPSKII--SNRVL 415
Query: 428 RDPETGNSKAFAFINFASFEASDAAIEAMNNQYL--CNRPISVSYAFKKD 571
RD + S+ F + ++ I NN L P+ + +A D
Sbjct: 416 RDSKE-QSRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRFADSTD 464
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 33.5 bits (73), Expect = 0.023
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = +2
Query: 203 VEFMGEEDADYAIKVMNMIKLY-GKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 379
+EF ++ A A++ + +L G P+ ++ QK +FI N+DPEV E +
Sbjct: 33 IEFESQDAARNALERQSTQRLISGNPISLDVVPEWQKPSYY--MLFISNIDPEVSENDIK 90
Query: 380 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 559
F + I + +V+R + G S + AFI A+ A M + R I V ++
Sbjct: 91 YLFQRYNFI--SARVLRCVD-GTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILV-HS 146
Query: 560 FKKD 571
K D
Sbjct: 147 VKSD 150
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 33.1 bits (72), Expect = 0.030
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 511
+++GNL V + TFSA+G + + + K AF+NF S E + +E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRML-------SHKHSAFLNFDSVETAKHVLEE 641
Query: 512 MNNQ--YLCNRPISVSYA 559
+N + + + P+ +S+A
Sbjct: 642 LNGKRIFFGSDPVCISFA 659
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.040
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Frame = +2
Query: 293 ASAHQKNLDVGA----NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS--- 451
ASA Q N VF+G L + + F G + + R G
Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88
Query: 452 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 559
AF+ F + E D AIE +N + L +R I V A
Sbjct: 89 SGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 28.3 bits (60), Expect = 0.85
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 437 ETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV-SYAFKKD 571
E + F F++FA+ E AIE MN + + + + V S F++D
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.040
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +2
Query: 314 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFE 487
+++ +++G L ++ L FS FG + + + G + FA++NF + E
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 30.3 bits (65), Expect = 0.21
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVH-MPKDRVTQTHQGYGFVEFMGEEDADYAIK- 244
IYVGGL + S L F + G V N+ + K T Q + ++ F +ED K
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 245 VMNMIKLYGKPVRVNKA 295
++ G +R+ +A
Sbjct: 67 YLSNATFKGSKLRIEEA 83
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.069
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +2
Query: 71 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKVM 250
IY+ L + E + EL G +++ + K+ + +G+ F EF DA+ AI +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 251 NMIKLYGKPVRVNKA 295
+ YG + A
Sbjct: 372 DGKDTYGNKLHAQFA 386
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.5 bits (63), Expect = 0.37
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Frame = +2
Query: 71 IYVGGLDDR-VTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAIKV 247
+++G L+ + +++ LW++F GP+ + + + YGFV+F ED A+
Sbjct: 365 LFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--------YGFVQFFTNEDCARALNA 416
Query: 248 M--NMI---KLYGKPVRVNKASAHQ-KNLDVGANVFIGNLDPEVDEKLLYDTFS 391
N + KL+ + ++ K +Q +N+ G++V N E+ L Y T S
Sbjct: 417 EQGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSS 470
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.49
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 311 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 406
N NVFIGNL EK + + F FG I
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 0.85
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF-------ASFEA 490
VF+ N+ P V + L F +FG + + +P TG S I+F + +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDL-DLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 491 SDAAIEAMNNQYLCNRPISV 550
+ A++ N +P+SV
Sbjct: 155 AKIAVQQANGLRFSGKPLSV 174
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 329 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 508
N++IGN D + + L + F FG I + R+ K AF+NF S ++ AI+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI-EYVNFFRE------KNCAFVNFTSLASAINAID 467
Query: 509 AMNNQ 523
+ +
Sbjct: 468 RIKQK 472
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 329 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 508
NVF+GNL + E + + FG I Q K++ + + AF++F + A+ A++
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQI-KIVTE------RNIAFVHFLNIAAAIKAVQ 259
Query: 509 AM 514
+
Sbjct: 260 EL 261
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 332 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK-AFAFINFASFEASDAAIE 508
+FIGN+ E+D+ + G + +V + NS +F F F S E A+E
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVA---DADNSMTSFGFAEFESNEQFSRALE 197
Query: 509 AMNN 520
A+N+
Sbjct: 198 ALND 201
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/72 (18%), Positives = 31/72 (43%)
Frame = +2
Query: 44 IAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEE 223
+ E + T+ + G+ + W + + V+ + + +R+ Q +GF E
Sbjct: 216 LGEVKKGDTVAIWGMGPIGLYAGRWAQILGASKVIGIEVVPERIELARQKFGFTVIDRNE 275
Query: 224 DADYAIKVMNMI 259
+D K+M ++
Sbjct: 276 VSDVPKKIMELV 287
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +2
Query: 62 DATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGYGFVEFMGEEDADYAI 241
++ +++ L ++T +++LF + GPV + + QT +G FV + +DA A
Sbjct: 11 NSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL--GNTVQT-RGTAFVVYENVQDARRAC 67
Query: 242 KVMN 253
+ ++
Sbjct: 68 EKLS 71
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 305 QKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASF 484
Q N + +VF+ N+ PE + L S FG + + E K A+++F +
Sbjct: 308 QSNELLETSVFVKNIPPETSDVSLKSAMSIFGPV-------KAIEFARRKGTAYVDFVNH 360
Query: 485 EASDAAI 505
E A+
Sbjct: 361 ECVQLAL 367
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 513 IASIAASEASNDAKLIKAKAFEFPVSGSLITLGVCNITPNAENVSYNNFSSTSGSKFP 340
I ++ E N+ K+ F P+S L+ + I N EN+S N+ S +S P
Sbjct: 375 ICALREWEEDNEKKIY---VFGKPLSSRLLMIHSPPILQNQENISSNDNSKSSPESSP 429
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +2
Query: 287 NKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 406
+K S + D + +++GN+D + ++ + FS +G +
Sbjct: 4 SKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 459 KAFEFPVSGSLITLGVCNITPNAENVSY 376
K F +I L +CNI P EN+S+
Sbjct: 537 KRSPFSSLSPVILLTICNIAPFVENLSF 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,093
Number of Sequences: 5004
Number of extensions: 45725
Number of successful extensions: 244
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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