Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11l18r
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    46   4e-06
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   2.5  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    27   2.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   7.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   7.6  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   10.0 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   10.0 
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   10.0 

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = -3

Query: 277 RSSISWYYNWMINKNRMKLSKMREDKKKILEEVMNTETYKVAKEILDKYG-SPDDQSKSL 101
           R +I+W+    +++ RM L K+  +K+KIL+ + + + Y   + +L+KYG  P    K L
Sbjct: 93  RWAIAWFCEKRLSRARMNLHKLNAEKRKILDALKSRKEYFETQALLEKYGEQPTLAQKKL 152

Query: 100 KPFVPTLNVPGNLPSS 53
                  +VPG+  SS
Sbjct: 153 SNAAAAKSVPGSSSSS 168


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 238 KNRMKLSKMREDKKKILEEVMNTETYKVAKEILDK 134
           KNR + +K++    K LEE +  ET K+ +EI D+
Sbjct: 17  KNRNESAKIKLAYAKALEESILCETRKIEQEIKDQ 51


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 475 SIERDGQYKEQTHKRVIGYVMAYSVG 398
           S+E+DG  K   H RV+G    Y+VG
Sbjct: 411 SLEKDGGVKVDEHCRVLGAEDVYAVG 436


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 196 KILEEVMNTETYKVAKEILDKYGSPDDQSKSLKPFVPTLNVP 71
           K L+EV    T    K + +KYG P D +   K  V TL+ P
Sbjct: 229 KALKEVCGI-TASALKNLWNKYGDPGDVAFEAKVSVRTLSRP 269


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 238 KNRMKLSKMREDKKKILEEVMNTETYKVAKEILDK 134
           KN+   +++R +KKK+L E  N+      K   DK
Sbjct: 41  KNKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDK 75


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 244 INKNRMKLSKMREDKKKILEEVMNTETYKVAKEIL 140
           +N  ++K  K+R + +KI E + N E+     EIL
Sbjct: 24  LNPKKIKDKKLRSNIQKIEERIENVESSLAKTEIL 58


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 175 NTETYKVAKEILDKYGSPDDQSKSLKP 95
           N+E Y+ A  I++K+   +D+ + L+P
Sbjct: 485 NSEIYQKAYNIIEKFFGEEDEIEELEP 511


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 316 RHTATNATNTDSSPRTCSSKGPQITRIDPLNTP 414
           +HT++NAT   + P T S+  P ++ +   +TP
Sbjct: 408 QHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTP 440


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 128 SVFVKDFFGNLICLCVHHLFQYLLFIL 208
           ++FV +FFG    L V  ++QY+ F +
Sbjct: 288 AIFVLEFFGRRSPLIVGGIWQYICFFI 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,697
Number of Sequences: 5004
Number of extensions: 47973
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)